Browse Element(s) Details


Os.49613.1.S1_at

Description gb:AK103675.1
DB_XREF= gi:32988884
TID=Os.49613.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136B14, full insert sequence.
FL= gb:AK103675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5111011/11Cell division cycle protein 20 homolog, putative, expressed
LOC_Os05g282001/11chlorophyll synthase, ChlG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004659molecular_functionprenyltransferase activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49613.1.S1_at--536--9891Chr04:30051143..30051167 (25 bp)
TACTACCTTCATCTGTATTTCCCTA
LOC_Os04g51110
Os.49613.1.S1_at--410--3711Chr04:30051165..30051189 (25 bp)
CTAGCGCTTCTACACATTACACAGT
LOC_Os04g51110
Os.49613.1.S1_at--184--8691Chr04:30051195..30051219 (25 bp)
TGTGATGTCCAAAAGCTGCATGCAT
LOC_Os04g51110
Os.49613.1.S1_at--11--4771Chr04:30051209..30051233 (25 bp)
GCTGCATGCATATCTATTAACTACA
LOC_Os04g51110
Os.49613.1.S1_at--897--2011Chr04:30051228..30051252 (25 bp)
ACTACAAGTAGCTCATTGTGCTGTT
LOC_Os04g51110
Os.49613.1.S1_at--403--8692Chr05:16434585..16434893 (25 bp)
TGTGCTGTTTTGCTCTATGCATCTT
LOC_Os05g28200
Os.49613.1.S1_at--171--651Chr04:30051260..30051284 (25 bp)
ATGCATCTTTGCAGATACCCTTGGT
LOC_Os04g51110
Os.49613.1.S1_at--230--9891Chr04:30051502..30051526 (25 bp)
TACATTTTTATATACTTGCCAGGCT
LOC_Os04g51110
Os.49613.1.S1_at--3--2071Chr04:30051515..30051539 (25 bp)
ACTTGCCAGGCTTTTCTTGTAGTAA
LOC_Os04g51110
Os.49613.1.S1_at--1128--1151Chr04:30051535..30051559 (25 bp)
AGTAAGTTCCTCTCGTTGTGTAGTA
LOC_Os04g51110
Os.49613.1.S1_at--430--10791Chr04:30051569..30051593 (25 bp)
TTGATTGATTTTACTCTCGAGCCAA
LOC_Os04g51110
Target Sequence 
TACTACCTTCATCTGTATTTCCCTAGCGCTTCTACACATTACACAGTATCAATGTGATGTCCAAAAGCTGCATGCATATC
TATTAACTACAAGTAGCTCATTGTGCTGTTTTGCTCTATGCATCTTTGCAGATACCCTTGGTTCTGTGATCCAGTCATAA
CTTACAAAGAAGCAGACTTGGTGTGAAGGGTCATTTGCAGGAGAGATCATCTTACATTATTAGCAGAAGAGTTAGATTTT
GACATGTTGTATATAAGGTTTTGTGCTATGTTGATAACAATTTTATGTACATCAAGACCGGTTTGATGTATTGATTGGCG
TAGAAAAAATGTAAAAAAATTGCTTTTCTGCCAGTAATATACATTTTTATATACTTGCCAGGCTTTTCTTGTAGTAAGTT
CCTCTCGTTGTGTAGTAACTTGTAATTTGATTGATTTTACTCTCGAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis