Browse Element(s) Details


Os.5562.1.S1_at

Description gb:AB007452.1
DB_XREF= gi:6467125
GEN=Aox1(Ao1-1)
TID=Os.5562.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5562 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for alternative oxidase, complete cds.
PROD=alternative oxidase
FL= gb:AB004864.1 gb:AK064040.1 gb:AB007452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5115011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein
LOC_Os04g51172Os.54507.1.S1_at9/114+30078781..30086524expressed protein
LOC_Os04g51180OsAffx.26559.1.S1_at11/114+30092501..30097133G protein-coupled receptor 89 variant, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5562.1.S1_at--400--5451Chr04:30068926..30068950 (25 bp)
GAACCCAAAGTGGTACGAGCGCGCC
LOC_Os04g51150
Os.5562.1.S1_at--731--1891Chr04:30068643..30068663 (21 bp)
ACGTCAATCACTTCGCATCGGACAT
LOC_Os04g51150
Os.5562.1.S1_at--963--491Chr04:30068521..30068542 (22 bp)
ATCGGACATCCATTACCAGGGCATG
LOC_Os04g51150
Os.5562.1.S1_at--1156--5891Chr04:30068496..30068520 (25 bp)
GAGCTGAAGCAGACCCCTGCGCCGA
LOC_Os04g51150
Os.5562.1.S1_at--197--4571Chr04:30068478..30068502 (25 bp)
GCGCCGATCGGATATCACTGAGGAT
LOC_Os04g51150
Os.5562.1.S1_at--904--1951Chr04:30068462..30068486 (25 bp)
ACTGAGGATGTTTGTCTACTGCCGA
LOC_Os04g51150
Os.5562.1.S1_at--939--9911Chr04:30068446..30068470 (25 bp)
TACTGCCGAGGATTTGCATCACTAA
LOC_Os04g51150
Os.5562.1.S1_at--91--8651Chr04:30068408..30068432 (25 bp)
TGAGTATACTTCGTTTTTCAGGGAA
LOC_Os04g51150
Os.5562.1.S1_at--450--6011Chr04:30068376..30068400 (25 bp)
GAGAGCTCTTTAGCTGTATCGGATT
LOC_Os04g51150
Os.5562.1.S1_at--321--6911Chr04:30068361..30068385 (25 bp)
GTATCGGATTTGGTAATTGCTACTA
LOC_Os04g51150
Os.5562.1.S1_at--1030--2911Chr04:30068313..30068337 (25 bp)
AAGGAGTCTCCTTGTTTGAAGTACA
LOC_Os04g51150
Target Sequence 
GAACCCAAAGTGGTACGAGCGCGCCCTCGTCATCACCGTCCAGGGCGTCTTCTTCAACGCCTACTTCCTGGGTTACCTCC
TCTCCCCCAAGTTNCGCGCACCGCNTCGTCGGCTACCTCGAGGAGGAGGCCATCCNANTCGTACACCGAGTTCCTCAAGG
ACCTCGAGGCCGGCAAGATCGACAACGTCCNTGCCCCGGCCATCGCCATCGACTACTGGCGCCTCCCCGCCAACGCCACG
CTCAAGGACGTCGTCACCGTCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGGACATCCATTA
CCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGATATCACTGAGGATGTTTGTCTACTGCCGAGGATTTGCATC
ACTAATAATCAAATCAAATGAGTATACTTCGTTTTTCAGGGAAAGCAAATGAGAGCTCTTTAGCTGTATCGGATTTGGTA
ATTGCTACTAGTAACTACTAAGTACTGAAAAATAAGGAGTCTCCTTGTTTGAAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis