Browse Element(s) Details


OsAffx.26559.1.S1_at

Description tigr:9632.m04940
TID=OsAffx.26559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5118011/11G protein-coupled receptor 89 variant, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein
LOC_Os04g51172Os.54507.1.S1_at9/114+30078781..30086524expressed protein
LOC_Os04g51180OsAffx.26559.1.S1_at11/114+30092501..30097133G protein-coupled receptor 89 variant, putative, expressed
LOC_Os04g51190Os.9714.2.A1_a_at11/114+30098620..30102567growth-regulating factor, putative, expressed
LOC_Os04g51200NANA4+30118520..30120857retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26559.1.S1_at--838--1711Chr04:30093129..30093153 (25 bp)
ACCACCGCTGGTTTGATGCTATATT
LOC_Os04g51180
OsAffx.26559.1.S1_at--610--10251Chr04:30093106..30093130 (25 bp)
TTTGTGGCTAGTGCATTTCTGTCCT
LOC_Os04g51180
OsAffx.26559.1.S1_at--417--10731Chr04:30093082..30093106 (25 bp)
TTGCTTCTGATTTCTGCCCAATACA
LOC_Os04g51180
OsAffx.26559.1.S1_at--1141--6971Chr04:30093015..30093039 (25 bp)
GTACCATTTGTGCATAGTGTTCTTT
LOC_Os04g51180
OsAffx.26559.1.S1_at--362--1711Chr04:30092913..30093012 (25 bp)
ACCACTTTGTCCAAGGTTGACCCAT
LOC_Os04g51180
OsAffx.26559.1.S1_at--439--6651Chr04:30092898..30092922 (25 bp)
GTTGACCCATTCATTCTACCAGTTT
LOC_Os04g51180
OsAffx.26559.1.S1_at--505--2311Chr04:30092871..30092895 (25 bp)
AAAGGTTGTCGTTTCTCCATGGACT
LOC_Os04g51180
OsAffx.26559.1.S1_at--921--6071Chr04:30092787..30092811 (25 bp)
GAGTATGTTTCCTGACGTTGAATCA
LOC_Os04g51180
OsAffx.26559.1.S1_at--787--5531Chr04:30092758..30092782 (25 bp)
GAAACAGTTTCTCCATATGCAAGTC
LOC_Os04g51180
OsAffx.26559.1.S1_at--915--7551Chr04:30092691..30092715 (25 bp)
GGGCCGGTTGTAATGTTGTGTCCAC
LOC_Os04g51180
OsAffx.26559.1.S1_at--168--671Chr04:30092571..30092595 (25 bp)
ATGAAGTCGGTGTATCTCCCACAAT
LOC_Os04g51180
Target Sequence 
ACCACCGCTGGTTTGATGCTATATTTGTGGCTAGTGCATTTCTGTCCTTGCTTCTGATTTCTGCCCAATACACCTCCCGG
CAAACAGACAAGCACCCAATTGATTGATGCTTTTGTACCATTTGTGCATAGTGTTCTTTTAACCACTTTGTCCAAGGTTG
ACCCATTCATTCTACCAGTTTCCAAAGGTTGTCGTTTCTCCATGGACTTCCATATACAGTTACAGAACATAATACATCAG
TTAACTTGAAGGTGTCTCCTTGTTTTGGAGTATGTTTCCTGACGTTGAATCATGGTGAAACAGTTTCTCCATATGCAAGT
CATTAGGAATGCTTTGCATCGTGATGATGCAGAACTGCAAATGGGGCCGGTTGTAATGTTGTGTCCACATGATAATTGTT
TTTTGAAGACAAGAGGATGTCCTTTCTTAGGAATGAAGTATTGACTATGTAAAATAGCTTGAGAATAGCGTTGCTAGCAT
GATATGAAGTCGGTGTATCTCCCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis