Browse Element(s) Details


Os.54507.1.S1_at

Description gb:AK105483.1
DB_XREF= gi:32990692
TID=Os.54507.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B04, full insert sequence.
FL= gb:AK105483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g511729/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein
LOC_Os04g51172Os.54507.1.S1_at9/114+30078781..30086524expressed protein
LOC_Os04g51180OsAffx.26559.1.S1_at11/114+30092501..30097133G protein-coupled receptor 89 variant, putative, expressed
LOC_Os04g51190Os.9714.2.A1_a_at11/114+30098620..30102567growth-regulating factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54507.1.S1_at--519--4691Chr04:30080314..30080338 (25 bp)
GCGGCACGACGTGGATACAGAGCAT
LOC_Os04g51172
Os.54507.1.S1_at--244--6911Chr04:30079068..30079092 (25 bp)
GTATCTGTAACAAGGCATGCATCTA
LOC_Os04g51172
Os.54507.1.S1_at--735--4971Chr04:30079050..30079074 (25 bp)
GCATCTATGCATGAGTCGAGCAGAT
LOC_Os04g51172
Os.54507.1.S1_at--284--6491Chr04:30078992..30079016 (25 bp)
GATACCGCTGTTAGTTGCTGATCGG
LOC_Os04g51172
Os.54507.1.S1_at--711--6671Chr04:30078979..30079003 (25 bp)
GTTGCTGATCGGTTATCCTTGTTAC
LOC_Os04g51172
Os.54507.1.S1_at--589--2991Chr04:30078907..30078931 (25 bp)
AATGTATCTTTGATGCTGTGTCCCT
LOC_Os04g51172
Os.54507.1.S1_at--315--4731Chr04:30078893..30078917 (25 bp)
GCTGTGTCCCTCTTTGTGTAGACAA
LOC_Os04g51172
Os.54507.1.S1_at--971--7391Chr04:30078854..30078879 (25 bp)
GTGATGTGTTCTCACCTGGTTGCTG
LOC_Os04g51172
Os.54507.1.S1_at--19--7911Chr04:30078836..30078861 (25 bp)
GGTTGCTGCTTAAATTTTTCTTGTA
LOC_Os04g51172
Os.54507.1.S1_at--1150--5111NONE
GCAAATCTTCATATTCGTTGGTTCA
NONE
Os.54507.1.S1_at--6--10231Chr04:30078781..30078805 (25 bp)
TATTCGTAAGCTTGTCAAATCCTTT
NONE
Target Sequence 
GCGGCACGACGTGGATACAGAGCATCGAGGAGGAGGCCGGCGCCGACGACGTCACCGTCGTGGAGGATGCCGTGCCGAGG
GAGTGGACGGCGCAGATGGAGCCCGGCGTCCAGATCACCTTCGTCACGCTCCCCGGCGGTGGCAACGACCTCAAGCGCAT
CCGGTTCAGCCGCGAGAGGTTTGGTGAGGACAGGGCGAAGGTTTGGTGGGAGCACAACAGAGACAGAATACAAGCACAGT
ATCTGTAACAAGGCATGCATCTATGCATGAGTCGAGCAGATCAAGAGAAAAAGGGAGATAGATTAGGGAGAGGTGATACC
GCTGTTAGTTGCTGATCGGTTATCCTTGTTACAGTGCAAGGTAAAACAAAATAGTGAAAGTTGGTAGGGATAGGAGTGAA
ATGTATCTTTGATGCTGTGTCCCTCTTTGTGTAGACAACATATATAACGTGGTGATGTGTTCTCACCTGGTTGCTGCTTA
AATTTTTCTTGTAACGCAAATCTTCATATTCGTTGGTTCAATTTATTCGTAAGCTTGTCAAATCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis