Browse Element(s) Details


Os.53484.1.S1_at

Description gb:AK072897.1
DB_XREF= gi:32982920
TID=Os.53484.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147E21, full insert sequence.
FL= gb:AK072897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5114011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein
LOC_Os04g51172Os.54507.1.S1_at9/114+30078781..30086524expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53484.1.S1_at--758--9851Chr04:30066521..30066545 (25 bp)
TACACGACGTTCTTCGTGCTGGCCT
LOC_Os04g51140
Os.53484.1.S1_at--619--6491Chr04:30066249..30066273 (25 bp)
GATAGTTATCCTAATGTGGACCGGT
LOC_Os04g51140
Os.53484.1.S1_at--1051--711Chr04:30066220..30066244 (25 bp)
ATGTTACTAGGCCATTCCGAGTTGC
LOC_Os04g51140
Os.53484.1.S1_at--202--891Chr04:30066212..30066236 (25 bp)
AGGCCATTCCGAGTTGCTGGTGCAG
LOC_Os04g51140
Os.53484.1.S1_at--250--10491Chr04:30066136..30066160 (25 bp)
TTAACCTTCCAAGCCAGATGTATGC
LOC_Os04g51140
Os.53484.1.S1_at--978--6271Chr04:30066120..30066144 (25 bp)
GATGTATGCTTTTGCACTCGTGGTT
LOC_Os04g51140
Os.53484.1.S1_at--350--8491Chr04:30066088..30066112 (25 bp)
TGGCTGCGGTATGCTTCACAATTTT
LOC_Os04g51140
Os.53484.1.S1_at--209--7991Chr04:30066062..30066086 (25 bp)
GGATGCTTGATCCTCTCGAAATGGG
LOC_Os04g51140
Os.53484.1.S1_at--705--8511Chr04:30066024..30066048 (25 bp)
TGGAATCCTGGCCATCAAGCATGAT
LOC_Os04g51140
Os.53484.1.S1_at--17--151Chr04:30065960..30065984 (25 bp)
ATTAGAATCTTCTGTTTCCCATGCT
LOC_Os04g51140
Os.53484.1.S1_at--1015--3871Chr04:30065949..30065973 (25 bp)
CTGTTTCCCATGCTCTTTAAGATGA
LOC_Os04g51140
Target Sequence 
TACACGACGTTCTTCGTGCTGGCCTTCCTCGGCTACGAGAAGAGCACCGGCAAGAACCCGGCGGCCAATCTCAAGGCCTT
GCTGGGGATAGTTATCCTAATGTGGACCGGTAACAATGTTACTAGGCCATTCCGAGTTGCTGGTGCAGCTGCTTTGGCAC
CGGCGATCGACAAAGGGTTGAAGGGTATTCAAGAGAAACTTAACCTTCCAAGCCAGATGTATGCTTTTGCACTCGTGGTT
GGCTCCGTGGCTGCGGTATGCTTCACAATTTTTGGATGCTTGATCCTCTCGAAATGGGGAAAGTGATTTGTTGGAATCCT
GGCCATCAAGCATGATTGGTATGAATATTGGATCCAACTAGGTTAGTCTAGTTTTATTAGAATCTTCTGTTTCCCATGCT
CTTTAAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis