Browse Element(s) Details


Os.12853.1.S1_at

Description gb:AK121748.1
DB_XREF= gi:37991371
TID=Os.12853.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087C14, full insert sequence.
FL= gb:AK059135.1 gb:AK121748.1 gb:AK067675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5112011/11Af10-protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed
LOC_Os04g51166Os.53482.1.S1_at11/114+30075700..30078336expressed protein
LOC_Os04g51172Os.54507.1.S1_at9/114+30078781..30086524expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12853.1.S1_at--690--4691Chr04:30056519..30056543 (25 bp)
GCGGCTCCCAAGTCAGATACCAAGA
LOC_Os04g51120
Os.12853.1.S1_at--813--3851Chr04:30056577..30056601 (25 bp)
CTGACTCATTGAGCCGTGGACTGAT
LOC_Os04g51120
Os.12853.1.S1_at--1078--8971Chr04:30056735..30056759 (25 bp)
TGAACTTAGCCGACGTTGGGATTGT
LOC_Os04g51120
Os.12853.1.S1_at--16--7811Chr04:30056777..30056801 (25 bp)
GGTCTGATGATAAAGCTCTGCCCTC
LOC_Os04g51120
Os.12853.1.S1_at--824--5271Chr04:30056834..30056858 (25 bp)
GAATGTCCGGAATTCCTTCATCTAC
LOC_Os04g51120
Os.12853.1.S1_at--1037--31Chr04:30056954..30056978 (25 bp)
ATTGTCGGAATGTCGGCTTGTGCCT
LOC_Os04g51120
Os.12853.1.S1_at--694--631Chr04:30057016..30057040 (25 bp)
ATGCTTACATTCCTTTACAATCGCC
LOC_Os04g51120
Os.12853.1.S1_at--689--2911Chr04:30057044..30057068 (25 bp)
AAGGATCGTGATCTTGGTTCGTCTT
LOC_Os04g51120
Os.12853.1.S1_at--592--9591Chr04:30057065..30057089 (25 bp)
TCTTGTCGCGCTTGTATTGTATTTA
LOC_Os04g51120
Os.12853.1.S1_at--172--8911Chr04:30057103..30057127 (25 bp)
TGAGAGACTCCTACCTATATCACAC
LOC_Os04g51120
Os.12853.1.S1_at--126--10111Chr04:30057174..30057198 (25 bp)
TATGGCTCACCTCTATATTGCGATT
LOC_Os04g51120
Target Sequence 
GCGGCTCCCAAGTCAGATACCAAGAAAGAAAATTTTCAGGTCAAGTCTGGCATATGGGCTGACTCATTGAGCCGTGGACT
GATTGATCTGAACATAACTGGACCAAAGAAGGTGAACTTAGCCGACGTTGGGATTGTCGGTGGCCTCGATGACGGGTCTG
ATGATAAAGCTCTGCCCTCATGGACCATGGGTGCAGGAGGTTCCAGCCTAGGAATGTCCGGAATTCCTTCATCTACACAA
AGTGGTGGCATTGAGAGCTTAGCTAACTACAACAAGTACCAGTTTGGCTTTAAATGAGCTTTCATGTGAGGCTTTCTAGT
ATATGCCGGTTATTGTCGGAATGTCGGCTTGTGCCTTATTTATTTTTTGTTGATTCTATTCTCCCCTCTTTTGATGCTTA
CATTCCTTTACAATCGCCTCCAAGGATCGTGATCTTGGTTCGTCTTGTCGCGCTTGTATTGTATTTATTGGATTTGCGGA
TGAGAGACTCCTACCTATATCACACCCTGATTCAATTTAACTGTACTGTTATTTCACAATCGTGTTAATCCTATGGCTCA
CCTCTATATTGCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis