Browse Element(s) Details


Os.10506.1.S1_at

Description gb:AK101463.1
DB_XREF= gi:32986672
TID=Os.10506.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040H02, full insert sequence.
FL= gb:AK101463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1722011/11Leucine Rich Repeat family protein, expressed
LOC_Os04g511201/11Af10-protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17189NANA7+10118574..10119009NA
LOC_Os07g17200NANA7+10123288..10123626hypothetical protein
LOC_Os07g17210OsAffx.28487.1.S1_at11/117+10126641..10135779chromatin assembly factor-1, putative, expressed
LOC_Os07g17220Os.10506.1.S1_at11/117+10140594..10144188Leucine Rich Repeat family protein, expressed
LOC_Os07g17230OsAffx.16307.1.S1_at11/117+10153757..10158080B3 DNA binding domain containing protein, expressed
LOC_Os07g17240Os.35344.3.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240Os.35344.18.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.2.S1_s_at8/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.3.S1_x_at6/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.5.S1_x_at4/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.1.S1_s_at2/117+10160360..10166992transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10506.1.S1_at--276--5651Chr07:10141155..10141179 (25 bp)
GACAGCTGCAAATATCATTTCTCTC
LOC_Os07g17220
Os.10506.1.S1_at--1153--9731Chr07:10141099..10141123 (25 bp)
TAATTGCTCATCAGTTACGACCAAG
LOC_Os07g17220
Os.10506.1.S1_at--421--5931Chr07:10141053..10141077 (25 bp)
GAGCATTAGACTTTTTGCACTCACA
LOC_Os07g17220
Os.10506.1.S1_at--384--3431Chr07:10140995..10141019 (25 bp)
CAGGGACTTCTGGTTTACAATATAA
LOC_Os07g17220
Os.10506.1.S1_at--1091--3111Chr07:10140914..10140938 (25 bp)
AATTTGTTCATTCTTCCCTGATCAG
LOC_Os07g17220
Os.10506.1.S1_at--858--6231Chr07:10140872..10140896 (25 bp)
GATGGAATACATACCACCTTCAAGT
LOC_Os07g17220
Os.10506.1.S1_at--70--8991Chr07:10140848..10140872 (25 bp)
TGAACTGTCGTACACATGCATGGCA
LOC_Os07g17220
Os.10506.1.S1_at--181--10511Chr07:10140812..10140836 (25 bp)
TTCAATCCTAGAAGCTTCCTGTTCA
LOC_Os07g17220
Os.10506.1.S1_at--528--631Chr07:10140737..10140761 (25 bp)
ATGCTCATGGATTGGTGCTATTTTG
LOC_Os07g17220
Os.10506.1.S1_at--222--6811Chr07:10140650..10140674 (25 bp)
GTTTTGTTCCAAATGTACCCGATCA
LOC_Os07g17220
Os.10506.1.S1_at--227--2032Chr04:30055239..30055411 (25 bp)
ACTACTGAATGCATGTTCCTGGAAA
LOC_Os04g51120
Target Sequence 
GACAGCTGCAAATATCATTTCTCTCTTTTTTCTTATGGATTGCACAAATATGCTCATAATTGCTCATCAGTTACGACCAA
GAATCATTAAATCATATGAAATGAGCATTAGACTTTTTGCACTCACAAACAGGGTGAATGAGGCAGACTATTTCAGTTAA
CAGGGACTTCTGGTTTACAATATAAAAACTATTTTAGCCCATACTACAATTTTTTTATCATGGAATAATTAAACTAAAAA
TAATTTGTTCATTCTTCCCTGATCAGAATATACACTGGAATTTGATGGAATACATACCACCTTCAAGTGAACTGTCGTAC
ACATGCATGGCAGAAGGTGATATTTCAATCCTAGAAGCTTCCTGTTCATACAGTACATAGAACATTGGAAATGGAGGGAG
GGGCACCAATTATTGTAAATGCTCATGGATTGGTGCTATTTTGTCAGAAAATCTTATTTCCAGGATTGACATGAATTTTT
CAGTAAGTACACATCGTATGAAATTGTTTTGTTCCAAATGTACCCGATCAAGAATATTCATTCACACCAAAACTACTGAA
TGCATGTTCCTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis