Browse Element(s) Details


OsAffx.19600.1.S1_x_at

Description tigr:9640.m01019
TID=OsAffx.19600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DAHP synthetase I family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g107847/112-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os04g510801/11Scramblase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10760OsAffx.19599.1.S1_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.19599.1.S1_x_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.24646.1.S1_at1/1112+5785004..5785551hypothetical protein
LOC_Os12g10770OsAffx.29203.3.A1_x_at1/1112+5792003..5796844transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10784Os.52003.1.S1_at11/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784Os.11494.1.S1_a_at10/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_x_at7/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_at6/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10800OsAffx.31552.2.S1_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.1.S1_x_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.3.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.22940.2.S1_at2/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10810Os.54088.1.S1_at11/1112+5816151..5818136expressed protein
LOC_Os12g10810OsAffx.19601.1.S1_at1/1112+5816151..5818136expressed protein
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005737cellular_componentcytoplasm
GO:0008676molecular_function3-deoxy-8-phosphooctulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19600.1.S1_x_at--379--2092Chr12:5798887..5798911 (25 bp)
ACATGCAACTATCCAATTTTCCCAA
NONE
OsAffx.19600.1.S1_x_at--543--3172Chr12:5798900..5798924 (25 bp)
CAATTTTCCCAAGTATACCAGGTAG
NONE
OsAffx.19600.1.S1_x_at--729--2631Chr12:5801679..5801703 (25 bp)
AACCATTCTTCTTGTTAGCTGGGCC
LOC_Os12g10784
OsAffx.19600.1.S1_x_at--516--3291Chr12:5801752..5801857 (25 bp)
CAAAGGCATCACAACCAAGCTTGGT
LOC_Os12g10784
OsAffx.19600.1.S1_x_at--40--1552Chr12:5801851..5801874 (24 bp)
AGCTTGGTCTGCCACTTGTGTTCAA
LOC_Os12g10784
OsAffx.19600.1.S1_x_at--892--351Chr12:5801905..5801929 (25 bp)
ATCAAAATCCTTCCGTGGTCCTGGT
LOC_Os12g10784
OsAffx.19600.1.S1_x_at--209--6271NONE
GATGTGCATGAAAGCCACCAGGCAT
NONE
OsAffx.19600.1.S1_x_at--594--3371Chr12:5802698..5802718 (21 bp)
CACCAGGCATGTCCCAGTCGTTTTT
LOC_Os12g10784
OsAffx.19600.1.S1_x_at--258--4171Chr12:5802706..5802730 (25 bp)
CCCAGTCGTTTTTGCCAGTTTGAAT
LOC_Os12g10784
OsAffx.19600.1.S1_x_at--920--1391Chr12:5803204..5803228 (25 bp)
AGACTGATCTTCTAGTGGCTGCTGC
LOC_Os12g10784
OsAffx.19600.1.S1_x_at--106--9471NONE
TCTGTGCTCCTTCTGTTATGGCCAA
NONE
Target Sequence 
ACATGCAACTATCCAATTTTCCCAAGTATACCAGGTAGGAGTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGGCAATGGA
CGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAAT
CAGAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAGCTTGGTCTGCCACTTGTGTTCAAGTCC
AGCTTTGATAAAGCAAATCGTACATCATCAAAATCCTTCCGTGGTCCTGGTCTGGAGGAAGGCCTGAAGATACTTGAAAA
AGTGAAAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAGGCATGTCCCAGTCGTTTTTGCCAGT
TTGAATATCATCAGAAAAACAAGACTGATCTTCTAGTGGCTGCTGCCAAGACTGGAAAAATTATCAACATCAAGAAAGGA
CAATTCTGTGCTCCTTCTGTTATGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19600.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis