Browse Element(s) Details


OsAffx.19600.1.S1_at

Description tigr:9640.m01019
TID=OsAffx.19600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DAHP synthetase I family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g107846/112-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10760OsAffx.19599.1.S1_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.19599.1.S1_x_at8/1112+5785004..5785551hypothetical protein
LOC_Os12g10760OsAffx.24646.1.S1_at1/1112+5785004..5785551hypothetical protein
LOC_Os12g10770OsAffx.29203.3.A1_x_at1/1112+5792003..5796844transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10784Os.52003.1.S1_at11/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784Os.11494.1.S1_a_at10/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_x_at7/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_at6/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10800OsAffx.31552.2.S1_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.1.S1_x_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.3.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.22940.2.S1_at2/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10810Os.54088.1.S1_at11/1112+5816151..5818136expressed protein
LOC_Os12g10810OsAffx.19601.1.S1_at1/1112+5816151..5818136expressed protein
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005737cellular_componentcytoplasm
GO:0008676molecular_function3-deoxy-8-phosphooctulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19600.1.S1_at--1030--10192Chr12:5798880..5798904 (25 bp)
TATTTGTACATGCAACTATCCAATT
NONE
OsAffx.19600.1.S1_at--380--2092Chr12:5798887..5798911 (25 bp)
ACATGCAACTATCCAATTTTCCCAA
NONE
OsAffx.19600.1.S1_at--456--5152Chr12:5798891..5798915 (25 bp)
GCAACTATCCAATTTTCCCAAGTAT
NONE
OsAffx.19600.1.S1_at--437--9212Chr12:5798898..5798922 (25 bp)
TCCAATTTTCCCAAGTATACCAGGT
NONE
OsAffx.19600.1.S1_at--986--8692Chr12:5798903..5798927 (25 bp)
TTTTCCCAAGTATACCAGGTAGGAG
NONE
OsAffx.19600.1.S1_at--595--3371Chr12:5802698..5802718 (21 bp)
CACCAGGCATGTCCCAGTCGTTTTT
LOC_Os12g10784
OsAffx.19600.1.S1_at--430--711Chr12:5802702..5802726 (25 bp)
ATGTCCCAGTCGTTTTTGCCAGTTT
LOC_Os12g10784
OsAffx.19600.1.S1_at--257--4171Chr12:5802706..5802730 (25 bp)
CCCAGTCGTTTTTGCCAGTTTGAAT
LOC_Os12g10784
OsAffx.19600.1.S1_at--427--7211Chr12:5802710..5802734 (25 bp)
GTCGTTTTTGCCAGTTTGAATATCA
LOC_Os12g10784
OsAffx.19600.1.S1_at--514--10691Chr12:5802717..5802741 (25 bp)
TTGCCAGTTTGAATATCATCAGAAA
LOC_Os12g10784
OsAffx.19600.1.S1_at--628--3411Chr12:5802736..5803218 (25 bp)
CAGAAAAACAAGACTGATCTTCTAG
LOC_Os12g10784
Target Sequence 
TATTTGTACATGCAACTATCCAATTTTCCCAAGTATACCAGGTAGGAGTGTGGGACTGGGAGCGGCGGCGGCGTCGGAGG
CAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTG
ATTGAATCAGAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAGCTTGGTCTGCCACTTGTGTT
CAAGTCCAGCTTTGATAAAGCAAATCGTACATCATCAAAATCCTTCCGTGGTCCTGGTCTGGAGGAAGGCCTGAAGATAC
TTGAAAAAGTGAAAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAGGCATGTCCCAGTCGTTTT
TGCCAGTTTGAATATCATCAGAAAAACAAGACTGATCTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis