Browse Element(s) Details


OsAffx.31689.1.S1_at

Description tigr:9640.m01023
TID=OsAffx.31689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1082011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10770OsAffx.29203.3.A1_x_at1/1112+5792003..5796844transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10784Os.52003.1.S1_at11/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784Os.11494.1.S1_a_at10/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_x_at7/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10784OsAffx.19600.1.S1_at6/1112+5800433..58062172-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
LOC_Os12g10800OsAffx.31552.2.S1_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.1.S1_x_at5/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.31552.3.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.11270.1.S1_x_at4/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10800OsAffx.22940.2.S1_at2/1112+5807105..5815178transposon protein, putative, Mutator sub-class
LOC_Os12g10810Os.54088.1.S1_at11/1112+5816151..5818136expressed protein
LOC_Os12g10810OsAffx.19601.1.S1_at1/1112+5816151..5818136expressed protein
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified
LOC_Os12g10840OsAffx.31690.1.S1_at11/1112+5846573..5846888hypothetical protein
LOC_Os12g10850OsAffx.19602.1.S1_at11/1112+5848741..5851370A/G-specific adenine glycosylase family protein
LOC_Os12g10859NANA12+5852972..5853344NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31689.1.S1_at--1078--5471Chr12:5825641..5825665 (25 bp)
GAACTTTGGTGCCATTACCCTAATC
LOC_Os12g10820
OsAffx.31689.1.S1_at--224--3151Chr12:5825697..5825721 (25 bp)
AATTCAGATCCGTCTATGGGCTAAA
LOC_Os12g10820
OsAffx.31689.1.S1_at--675--6691Chr12:5825724..5826234 (25 bp)
GTTCCCTGAACCAAAAGCGCCAATA
LOC_Os12g10820
OsAffx.31689.1.S1_at--460--3171Chr12:5826230..5826254 (25 bp)
CAATATCCTAACAGGGCTGGTCCCA
LOC_Os12g10820
OsAffx.31689.1.S1_at--773--7671Chr12:5826269..5826293 (25 bp)
GGGATTGACTCACCTACAAATGCAG
LOC_Os12g10820
OsAffx.31689.1.S1_at--760--171Chr12:5826305..5826329 (25 bp)
ATTTTTATCCCATACCTTGCTGTGA
LOC_Os12g10820
OsAffx.31689.1.S1_at--391--3231Chr12:5826331..5826355 (25 bp)
CAAGTTCCTTCTTTACTGCTTTGAG
LOC_Os12g10820
OsAffx.31689.1.S1_at--317--2231Chr12:5826386..5826477 (25 bp)
AAAGGCAAGGTTCTTCCCAATGAAG
LOC_Os12g10820
OsAffx.31689.1.S1_at--1071--10151Chr12:5826478..5826502 (25 bp)
TATCTAGTTTTACCCATCAGTCCAC
LOC_Os12g10820
OsAffx.31689.1.S1_at--574--8211Chr12:5827203..5827227 (25 bp)
GGCAACGAATGGCTGAAATCTCTTA
LOC_Os12g10820
OsAffx.31689.1.S1_at--53--5671Chr12:5827239..5827263 (25 bp)
GACATGATGCTTTGGCCTTTTGAGA
LOC_Os12g10820
Target Sequence 
GAACTTTGGTGCCATTACCCTAATCCCTAAAATTCCCTCCCCTACCTCAATCAAGCAATTCAGATCCGTCTATGGGCTAA
ATGGTTCCCTGAACCAAAAGCGCCAATATCCTAACAGGGCTGGTCCCACACCTCTTCCCTGGGGGATTGACTCACCTACA
AATGCAGATGATACAGTGATTTTTATCCCATACCTTGCTGTGACCAAGTTCCTTCTTTACTGCTTTGAGGACATGTCTGG
TCTAAAGATTAACTATGATAAAGGCAAGGTTCTTCCCAATGAAGTATCTAGTTTTACCCATCAGTCCACAAAAGAAGGTC
TTTTGGCCCGGTGGAGGTGGAGTGGGAAAACCTTGGGCAACGAATGGCTGAAATCTCTTACTGATGAGGAAGACATGATG
CTTTGGCCTTTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis