Browse Element(s) Details


OsAffx.19602.1.S1_at

Description tigr:9640.m01026
TID=OsAffx.19602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AG-specific adenine glycosylase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1085011/11A/G-specific adenine glycosylase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10820OsAffx.31689.1.S1_at11/1112+5821581..5828140expressed protein
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified
LOC_Os12g10840OsAffx.31690.1.S1_at11/1112+5846573..5846888hypothetical protein
LOC_Os12g10850OsAffx.19602.1.S1_at11/1112+5848741..5851370A/G-specific adenine glycosylase family protein
LOC_Os12g10859NANA12+5852972..5853344NA
LOC_Os12g10870Os.54355.1.S1_at11/1112+5855199..5858246Leucine Rich Repeat family protein, expressed
LOC_Os12g10880OsAffx.19603.1.S1_at9/1112+5865022..5865882hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19602.1.S1_at--1140--10671Chr12:5850597..5850621 (25 bp)
TTCCAGCCAAAATGCTTCAGTCAAA
LOC_Os12g10850
OsAffx.19602.1.S1_at--810--1211Chr12:5850621..5850645 (25 bp)
AGTTACAGACTTCCCACGAGTAGTC
LOC_Os12g10850
OsAffx.19602.1.S1_at--687--1231Chr12:5850638..5850662 (25 bp)
GAGTAGTCCCAAAAGCCAAACCACG
LOC_Os12g10850
OsAffx.19602.1.S1_at--750--4731Chr12:5850676..5850700 (25 bp)
GCTGTCTGTGTTGTTCAAATTTCAC
LOC_Os12g10850
OsAffx.19602.1.S1_at--585--6751Chr12:5850688..5850712 (25 bp)
GTTCAAATTTCACAAGGCTTTGGTG
LOC_Os12g10850
OsAffx.19602.1.S1_at--430--1272Chr12:5850738..5850762 (25 bp)
AGATAATCTTTTTCTACTGATCAAG
LOC_Os12g10850
OsAffx.19602.1.S1_at--294--4111Chr12:5850819..5850843 (25 bp)
CGAAGGGAAGACTGATACGCTGAAT
LOC_Os12g10850
OsAffx.19602.1.S1_at--701--1251Chr12:5851132..5851156 (25 bp)
AGATAGCACCAAACTGAGATTGATT
LOC_Os12g10850
OsAffx.19602.1.S1_at--737--10431Chr12:5851155..5851179 (25 bp)
TTAACGAAAATGCAGTCCAGTCGAT
LOC_Os12g10850
OsAffx.19602.1.S1_at--316--5031Chr12:5851166..5851190 (25 bp)
GCAGTCCAGTCGATGGGATTGACAT
LOC_Os12g10850
OsAffx.19602.1.S1_at--341--8531Chr12:5851179..5851203 (25 bp)
TGGGATTGACATCAGGAATCCGGAA
LOC_Os12g10850
Target Sequence 
TTCCAGCCAAAATGCTTCAGTCAAAGTTACAGACTTCCCACGAGTAGTCCCAAAAGCCAAACCACGGTCTGATTTTGCTG
CTGTCTGTGTTGTTCAAATTTCACAAGGCTTTGGTGAAGGTATAGCAGAGGCAGAGGGCAAAGATAATCTTTTTCTACTG
ATCAAGAGGCCAGAAGAGGGCCTTCTCGCTGGGCTCTGGGAGTTCCCATCTGTTCTTGTGAACGAAGGGAAGACTGATAC
GCTGAATAGGAGAAAAGAGATGGACAAATATTTGAAGCAGCTTCTTAGCATAGATGTTACAAGGAGATCCAGTGTGATCC
TCAGGGAAGATGTTGGCCAACATGTTCACATTTTCTCACACATTCGGCTGACGATGTTTGTTGAGCTGATGATTTTGAAC
CTCAAAGATGATGGGGAGGAATTATGCAAGGAGGGACAAGATAGCACCAAACTGAGATTGATTAACGAAAATGCAGTCCA
GTCGATGGGATTGACATCAGGAATCCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis