Browse Element(s) Details


OsAffx.19603.1.S1_at

Description tigr:9640.m01029
TID=OsAffx.19603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g108809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10830OsAffx.19601.1.S1_at1/1112+5828930..5842420retrotransposon protein, putative, unclassified
LOC_Os12g10840OsAffx.31690.1.S1_at11/1112+5846573..5846888hypothetical protein
LOC_Os12g10850OsAffx.19602.1.S1_at11/1112+5848741..5851370A/G-specific adenine glycosylase family protein
LOC_Os12g10859NANA12+5852972..5853344NA
LOC_Os12g10870Os.54355.1.S1_at11/1112+5855199..5858246Leucine Rich Repeat family protein, expressed
LOC_Os12g10880OsAffx.19603.1.S1_at9/1112+5865022..5865882hypothetical protein
LOC_Os12g10890OsAffx.442.1.S1_x_at6/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.2.S1_s_at6/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.4.S1_at4/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.4.S1_x_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.1.S1_x_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.442.1.S1_at3/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.1.S1_at2/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.24587.1.S1_x_at2/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10890OsAffx.30226.2.S1_x_at1/1112+5879764..5883730retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19603.1.S1_at--771--3891Chr12:5865736..5865760 (25 bp)
CTGGTGCTCAAATCAAGAGCCAGGA
LOC_Os12g10880
OsAffx.19603.1.S1_at--142--7311Chr12:5865733..5865757 (25 bp)
GTGCTCAAATCAAGAGCCAGGAATA
LOC_Os12g10880
OsAffx.19603.1.S1_at--911--2251Chr12:5865727..5865751 (25 bp)
AAATCAAGAGCCAGGAATAATATGC
LOC_Os12g10880
OsAffx.19603.1.S1_at--366--8451Chr12:5865705..5865726 (22 bp)
GGCCACCCTTATCGACACGGAGAAA
LOC_Os12g10880
OsAffx.19603.1.S1_at--613--4411Chr12:5865705..5865725 (21 bp)
GCCACCCTTATCGACACGGAGAAAA
LOC_Os12g10880
OsAffx.19603.1.S1_at--1143--4351Chr12:5865705..5865724 (20 bp)
CCACCCTTATCGACACGGAGAAAAG
LOC_Os12g10880
OsAffx.19603.1.S1_at--98--10411NONE
TTATCGACACGGAGAAAAGGCCTTC
NONE
OsAffx.19603.1.S1_at--1097--9351NONE
TCGACACGGAGAAAAGGCCTTCAGT
NONE
OsAffx.19603.1.S1_at--702--7991Chr12:5865084..5865106 (23 bp)
GGAGAAAAGGCCTTCAGTGCCGGTT
LOC_Os12g10880
OsAffx.19603.1.S1_at--547--5971Chr12:5865083..5865106 (24 bp)
GAGAAAAGGCCTTCAGTGCCGGTTG
LOC_Os12g10880
OsAffx.19603.1.S1_at--502--5511Chr12:5865081..5865105 (25 bp)
GAAAAGGCCTTCAGTGCCGGTTGGG
LOC_Os12g10880
Target Sequence 
CTGGTGCTCAAATCAAGAGCCAGGAATAATATGCGGCCACCCTTATCGACACGGAGAAAAGGCCTTCAGTGCCGGTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis