Browse Element(s) Details


Os.14757.1.S1_at

Description gb:AK065249.1
DB_XREF= gi:32975267
TID=Os.14757.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002J04, full insert sequence.
FL= gb:AK065249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5110011/11Nuclear WD protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51090NANA4+30030370..30044364expressed protein
LOC_Os04g51100Os.14757.1.S1_at11/114+30045175..30048292Nuclear WD protein, putative, expressed
LOC_Os04g51110Os.49613.1.S1_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51110OsAffx.4143.1.S1_x_at11/114+30048749..30051623Cell division cycle protein 20 homolog, putative, expressed
LOC_Os04g51120Os.12853.1.S1_at11/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51120Os.10506.1.S1_at1/114+30052141..30057198Af10-protein, putative, expressed
LOC_Os04g51130Os.12937.1.S1_at11/114+30063252..30065525calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os04g51140Os.53484.1.S1_at11/114+30065884..30067132expressed protein
LOC_Os04g51150Os.5562.1.S1_at11/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51150Os.53709.1.S1_at1/114+30068098..30070776transposon protein, putative, unclassified, expressed
LOC_Os04g51160Os.3406.1.S1_at11/114+30072379..30073956transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14757.1.S1_at--907--9471Chr04:30048051..30048075 (25 bp)
TCTGATCACGTATTGAGTCCTGGGA
LOC_Os04g51100
Os.14757.1.S1_at--1139--6091Chr04:30048065..30048089 (25 bp)
GAGTCCTGGGAAGCCATGCATATAT
LOC_Os04g51100
Os.14757.1.S1_at--1087--2791Chr04:30048100..30048124 (25 bp)
AAGATGTTTGCCTTGTGCTCGCTGA
LOC_Os04g51100
Os.14757.1.S1_at--882--7311Chr04:30048114..30048138 (25 bp)
GTGCTCGCTGATAAAATGCTTACTG
LOC_Os04g51100
Os.14757.1.S1_at--723--2271Chr04:30048127..30048151 (25 bp)
AAATGCTTACTGTTTGTCACCAACG
LOC_Os04g51100
Os.14757.1.S1_at--477--7111Chr04:30048142..30048166 (25 bp)
GTCACCAACGTATTAGGCCAATCTA
LOC_Os04g51100
Os.14757.1.S1_at--110--2991Chr04:30048167..30048191 (25 bp)
AATGTGTTGCATGTCATACGTGGGT
LOC_Os04g51100
Os.14757.1.S1_at--342--7491Chr04:30048190..30048214 (25 bp)
GTGGTGGGTCATGGTTTACGTTTAT
LOC_Os04g51100
Os.14757.1.S1_at--1141--211Chr04:30048213..30048237 (25 bp)
ATTTGTGGTATCCTCATCTGTGCCA
LOC_Os04g51100
Os.14757.1.S1_at--241--491Chr04:30048228..30048252 (25 bp)
ATCTGTGCCAGGATCATACCTGTGT
LOC_Os04g51100
Os.14757.1.S1_at--214--7971Chr04:30048238..30048262 (25 bp)
GGATCATACCTGTGTATCATGGACA
LOC_Os04g51100
Target Sequence 
TCTGATCACGTATTGAGTCCTGGGAAGCCATGCATATATCAAACTGTACAAGATGTTTGCCTTGTGCTCGCTGATAAAAT
GCTTACTGTTTGTCACCAACGTATTAGGCCAATCTAAATGTGTTGCATGTCATACGTGGGTGGTGGGTCATGGTTTACGT
TTATTTGTGGTATCCTCATCTGTGCCAGGATCATACCTGTGTATCATGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis