Browse Element(s) Details


Os.11399.1.S1_at

Description gb:AK060912.1
DB_XREF= gi:32970930
TID=Os.11399.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F12, full insert sequence.
FL= gb:AK060912.1 gb:AK099004.1 gb:AK068855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2820011/11chlorophyll synthase, ChlG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28190Os.4776.1.S1_at11/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28190Os.18091.1.S1_at1/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28200Os.11399.1.S1_at11/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28200Os.49613.1.S1_at1/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28210Os.12812.1.S1_at1/115+16440849..16441243Embryonic abundant protein 1, putative
LOC_Os05g28220OsAffx.27056.1.S1_at11/115+16450431..16451276hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_at2/115+16459608..16460894hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_x_at1/115+16459608..16460894hypothetical protein
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004659molecular_functionprenyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11399.1.S1_at--669--6311Chr05:16439168..16439192 (25 bp)
GATGAAAGCAGCAATCGCCCTGGAC
LOC_Os05g28200
Os.11399.1.S1_at--1066--4151Chr05:16439183..16439207 (25 bp)
CGCCCTGGACTGTGATTCTGTGACA
LOC_Os05g28200
Os.11399.1.S1_at--838--10771Chr05:16439234..16439258 (25 bp)
TTGATGGTTCTCTGCAACTGTTGGT
LOC_Os05g28200
Os.11399.1.S1_at--772--9651Chr05:16439269..16439293 (25 bp)
TCAGCAGCTATGTTCGCGAGTGTAT
LOC_Os05g28200
Os.11399.1.S1_at--283--8731Chr05:16439289..16439313 (25 bp)
TGTATTAGCGCTCTTTTGGCGGTGC
LOC_Os05g28200
Os.11399.1.S1_at--778--3031Chr05:16439331..16439355 (25 bp)
AATCGTTTCTTGTTGATTCCCTGAA
LOC_Os05g28200
Os.11399.1.S1_at--567--6571Chr05:16439345..16439369 (25 bp)
GATTCCCTGAACTGATCCAGATCAA
LOC_Os05g28200
Os.11399.1.S1_at--120--2411Chr05:16439368..16439392 (25 bp)
AAACATCTTCTAAAGGTTCTGCGAT
LOC_Os05g28200
Os.11399.1.S1_at--405--7891Chr05:16439382..16439406 (25 bp)
GGTTCTGCGATGCAATGCTAGCTGC
LOC_Os05g28200
Os.11399.1.S1_at--236--9891Chr05:16439438..16439462 (25 bp)
TACTTTGCCGCCGATGTTGTAGGGT
LOC_Os05g28200
Os.11399.1.S1_at--174--9711Chr05:16439619..16439643 (25 bp)
TAAACAATTTGTGACCTTAGGTGCG
LOC_Os05g28200
Target Sequence 
GATGAAAGCAGCAATCGCCCTGGACTGTGATTCTGTGACAGCGAAGTTTTGGGTGGAAGATGCAGATTGATGGTTCTCTG
CAACTGTTGGTGGAGCTAGGTTCAGCAGCTATGTTCGCGAGTGTATTAGCGCTCTTTTGGCGGTGCTGGGTAGTAGAATG
TAGAATCGTTTCTTGTTGATTCCCTGAACTGATCCAGATCAAACATCTTCTAAAGGTTCTGCGATGCAATGCTAGCTGCA
GACGGGAGATGGTACAGGGGGTCGTTTTGCTACTTTGCCGCCGATGTTGTAGGGTGTGTAGACAGACTGTAGATGAATAA
TGTCAGTAACACCTGTGGGGGGTTCAGTGCTAGTGGGCTGCAAAACTTGAGCACTGNCTTNCGATCAAATTGTGTCTTTG
ATTATGAAATTATGGAATCCAGCACAGGCAGGTAATAATTTCGTAATAGAGCATAAACAATTTGTGACCTTAGGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis