Browse Element(s) Details


OsAffx.19917.1.S1_at

Description tigr:9640.m03055
TID=OsAffx.19917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3156011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31520NANA12+18930822..18931274hypothetical protein
LOC_Os12g31530OsAffx.19915.1.S1_at10/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31530OsAffx.4453.1.S1_at1/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31540OsAffx.31963.1.S1_at11/1112+18938881..18941966expressed protein
LOC_Os12g31550OsAffx.19916.1.S1_at8/1112+18943639..18949263hypothetical protein
LOC_Os12g31560OsAffx.19917.1.S1_at11/1112+18956069..18958083Protein kinase domain containing protein
LOC_Os12g31570NANA12+18968858..18975051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31580NANA12+18977485..18978024retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31590Os.47463.1.S1_x_at6/1112+18982200..18985896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31590Os.14491.2.S1_x_at4/1112+18982200..18985896transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19917.1.S1_at--799--1831Chr12:18957550..18957574 (25 bp)
ACGCGGCCGGTGATCCATCGCGACA
LOC_Os12g31560
OsAffx.19917.1.S1_at--828--9431Chr12:18957622..18957646 (25 bp)
TCGGACTTTGGGTTGTCGGTCGCCT
LOC_Os12g31560
OsAffx.19917.1.S1_at--677--3331Chr12:18957661..18957685 (25 bp)
CACTGTTGTGATCTGTCCATTGACG
LOC_Os12g31560
OsAffx.19917.1.S1_at--577--8851Chr12:18957669..18957693 (25 bp)
TGATCTGTCCATTGACGGCACGCTA
LOC_Os12g31560
OsAffx.19917.1.S1_at--261--5751Chr12:18957682..18957706 (25 bp)
GACGGCACGCTAGGATACATCGACC
LOC_Os12g31560
OsAffx.19917.1.S1_at--1133--5811Chr12:18957703..18957727 (25 bp)
GACCCCGAGTACTTTGTGACGCACA
LOC_Os12g31560
OsAffx.19917.1.S1_at--97--1851Chr12:18957721..18957745 (25 bp)
ACGCACAGTGTGAAGCCAACGATAG
LOC_Os12g31560
OsAffx.19917.1.S1_at--3--2791Chr12:18957824..18957848 (25 bp)
AAGAGGACGACGGTGGCATCATCCC
LOC_Os12g31560
OsAffx.19917.1.S1_at--263--2611Chr12:18957933..18957957 (25 bp)
AACGCCGAGGCAGCTCCAGGCAGTG
LOC_Os12g31560
OsAffx.19917.1.S1_at--777--1391Chr12:18957971..18957995 (25 bp)
AGACTGCAGCTTGCTGCGTGCGGCT
LOC_Os12g31560
OsAffx.19917.1.S1_at--550--9411Chr12:18958028..18958052 (25 bp)
TCGTGGCCAACCTCCAGGCAGCGAT
LOC_Os12g31560
Target Sequence 
ACGCGGCCGGTGATCCATCGCGACATCAAGCCGTCGAACATCCTGCTCGACGAGGCCTGGGTGCCGCGCTTGTCGGACTT
TGGGTTGTCGGTCGCCTGGGACGGGACGGATCACTGTTGTGATCTGTCCATTGACGGCACGCTAGGATACATCGACCCCG
AGTACTTTGTGACGCACAGTGTGAAGCCAACGATAGACGTGTACAGCTTCGGGGTTGTGATGCTGGAGGTATTGACAGGG
ATAAAACCAATTTTTAAACGGAAGGAGAAGGAAGAAGAGGACGACGGTGGCATCATCCCCACGAGCTTGCTGGCCTTCGC
CCTGCCAATCGTCGAGGCAGGGGAGGTGCGGAAGGTGCTGGACAGGCGCCCGACGCCGGAGCCAACGCCGAGGCAGCTCC
AGGCAGTGGAACTGGTGGCGCAGACTGCAGCTTGCTGCGTGCGGCTGGAGCCCCAGGGCCGTCCAGCCATTTCGGAAGTC
GTGGCCAACCTCCAGGCAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis