Browse Element(s) Details


Os.49610.1.S1_at

Description gb:AK071138.1
DB_XREF= gi:32981161
TID=Os.49610.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081C03, full insert sequence.
FL= gb:AK071138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4267011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42620Os.15713.1.S1_a_at11/114+24998777..25000582Leucine Rich Repeat family protein, expressed
LOC_Os04g42634OsAffx.4060.1.S1_at11/114+25006094..25009700hypothetical protein
LOC_Os04g42634OsAffx.4061.1.S1_at10/114+25006094..25009700hypothetical protein
LOC_Os04g42634Os.25318.1.A1_at9/114+25006094..25009700hypothetical protein
LOC_Os04g42650Os.50505.2.S1_at11/114+25013340..25015569expressed protein
LOC_Os04g42670Os.49610.1.S1_at11/114+25025431..25027439F-box domain containing protein, expressed
LOC_Os04g42680OsAffx.14244.1.S1_at10/114+25030836..25032080hypothetical protein
LOC_Os04g42690Os.20755.1.S1_at11/114+25032328..25034055UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g42700Os.50861.1.S1_at11/114+25034712..25039323leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g42710NANA4+25044656..25046532retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49610.1.S1_at--293--1071Chr04:25025976..25026000 (25 bp)
AGGGTTGCCCAGTCTCAGACCGTGG
LOC_Os04g42670
Os.49610.1.S1_at--1128--4771Chr04:25025931..25025955 (25 bp)
GCTGCCCCAGCTTGGTCAAGGTGAA
LOC_Os04g42670
Os.49610.1.S1_at--1080--8471Chr04:25025846..25025870 (25 bp)
TGGCTCATTCTCTATCAGCTTGGAT
LOC_Os04g42670
Os.49610.1.S1_at--953--5911Chr04:25025749..25025773 (25 bp)
GAGCTTACTGATCAGATGGCAGCCA
LOC_Os04g42670
Os.49610.1.S1_at--737--851Chr04:25025734..25025758 (25 bp)
ATGGCAGCCATGGATCTCCCGACTA
LOC_Os04g42670
Os.49610.1.S1_at--677--3011Chr04:25025701..25025725 (25 bp)
AATGCACAATCATCTGCCCAGGCAA
LOC_Os04g42670
Os.49610.1.S1_at--1100--951Chr04:25025665..25025689 (25 bp)
AGGAGCGTCATGTCAGCACTCAGGA
LOC_Os04g42670
Os.49610.1.S1_at--702--3031Chr04:25025629..25025653 (25 bp)
AATCCTCCAGCTCTGTGATGTGAGA
LOC_Os04g42670
Os.49610.1.S1_at--897--8851Chr04:25025594..25025618 (25 bp)
TGATGAACCTATTTGCTACTTTATG
LOC_Os04g42670
Os.49610.1.S1_at--847--7951Chr04:25025498..25025522 (25 bp)
GGATAATTCTGTGTTACCATTGCTA
LOC_Os04g42670
Os.49610.1.S1_at--675--9651Chr04:25025468..25025492 (25 bp)
TCAGCAGTTGTTGCCCTTTCTCTGA
LOC_Os04g42670
Target Sequence 
AGGGTTGCCCAGTCTCAGACCGTGGGATGTGGGCACTGAATGGGGGCTGCCCCAGCTTGGTCAAGGTGAAATTGAAGAGA
TGCCGGGGCGTATCGTATGAATGTATTGAGAACCTGAAGGTGGTTAGGGGTGGCTCATTCTCTATCAGCTTGGATATTGT
ATTGGAGCGTGATGCTGGAGGTGCAATTGAAAATGGCGGGCAAGAGGCTGGACAGGTGCAAATTACAGAGCTTACTGATC
AGATGGCAGCCATGGATCTCCCGACTAACGCCAGCAATGCACAATCATCTGCCCAGGCAAGTAGTAGGATGAGGAGCGTC
ATGTCAGCACTCAGGAGGAGGTTTGGCAATCCTCCAGCTCTGTGATGTGAGATAAAAAAAATTGATGAACCTATTTGCTA
CTTTATGCATTCTAATCTCATATTCATGTTCCTTAGGTTATTAATTTTACTATCTAGTTCTCGCAAAATCATCATGATGG
ATAATTCTGTGTTACCATTGCTATTTCNTCAGCAGTTGTTGCCCTTTCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis