Browse Element(s) Details


Os.49656.1.S1_at

Description gb:AK100954.1
DB_XREF= gi:32986163
TID=Os.49656.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139N16, full insert sequence.
FL= gb:AK121494.1 gb:AK100954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2195011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21900OsAffx.13914.1.S1_at11/114+12375742..12378182hypothetical protein
LOC_Os04g21910OsAffx.13915.1.S1_at11/114+12381592..12383153pentatricopeptide, putative
LOC_Os04g21920NANA4+12387667..12388383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.14491.2.S1_x_at2/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.47463.1.S1_x_at1/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21940OsAffx.26090.1.S1_at11/114+12399031..12399405hypothetical protein
LOC_Os04g21950Os.49656.1.S1_at11/114+12400846..12402244WRKY DNA binding domain containing protein, expressed
LOC_Os04g21960NANA4+12406392..12409955retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g21970OsAffx.10633.1.S1_at9/114+12410233..12411306retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g21980NANA4+12412930..12413217hypothetical protein
LOC_Os04g21990NANA4+12422992..12428167retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49656.1.S1_at--638--9211Chr04:12401592..12401684 (25 bp)
TCCAAGCGCCGGAAGCATCGGGTGA
LOC_Os04g21950
Os.49656.1.S1_at--531--4211Chr04:12401695..12401719 (25 bp)
CCGCGTGCCGGCGATAAGCTCGAAG
LOC_Os04g21950
Os.49656.1.S1_at--1037--9791Chr04:12401709..12401733 (25 bp)
TAAGCTCGAAGGTGGCGGACATCCC
LOC_Os04g21950
Os.49656.1.S1_at--997--4071Chr04:12401737..12401761 (25 bp)
CGACGACTTCTCGTGGCGGAAGTAC
LOC_Os04g21950
Os.49656.1.S1_at--1146--3631Chr04:12401788..12401896 (25 bp)
CTTCCCACGAGGATACTACAAGTGT
LOC_Os04g21950
Os.49656.1.S1_at--725--9851Chr04:12401888..12401912 (25 bp)
TACAAGTGTAGCACGCTGCGCGGTT
LOC_Os04g21950
Os.49656.1.S1_at--3--1111Chr04:12401892..12401916 (25 bp)
AGTGTAGCACGCTGCGCGGTTGCCC
LOC_Os04g21950
Os.49656.1.S1_at--59--4211Chr04:12402067..12402091 (25 bp)
CCCCGGTGAAGAAGAGTGAGAATTA
LOC_Os04g21950
Os.49656.1.S1_at--830--5211Chr04:12402086..12402110 (25 bp)
GAATTAGCTTGTCGGTCATCATAAT
LOC_Os04g21950
Os.49656.1.S1_at--883--7811Chr04:12402099..12402123 (25 bp)
GGTCATCATAATTACCGTTAGAAAT
LOC_Os04g21950
Os.49656.1.S1_at--1087--3551Chr04:12402167..12402191 (25 bp)
CATCATTGTAGAACTAGCGTGTAAA
LOC_Os04g21950
Target Sequence 
TCCAAGCGCCGGAAGCATCGGGTGAAGAGGACGATCCGCGTGCCGGCGATAAGCTCGAAGGTGGCGGACATCCCCGCCGA
CGACTTCTCGTGGCGGAAGTACGGGCAGAAGCCCATCAAGGGCTCCCCCTTCCCACGAGGATACTACAAGTGTAGCACGC
TGCGCGGTTGCCCGGCGAGGAAGCACGTGGAGCGCGACCCGACCGACCCGTCCATGCTCATCGTCACCTACGAGGGCGAG
CACCGCCACTCCCCCTCCGCCGCCGGCCAGGACCACCCGCCGGCGCCGCCTCCGCCGCTGGCGCTGCCGCTCGCCTGAGA
TACCCCCGGTGAAGAAGAGTGAGAATTAGCTTGTCGGTCATCATAATTACCGTTAGAAATTATTTTTTTCGTTTTTCTCT
CTTTTTTTTTCTTTTTTTTACTGCATCATTGTAGAACTAGCGTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis