Browse Element(s) Details


OsAffx.13915.1.S1_at

Description tigr:9632.m02019
TID=OsAffx.13915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2191011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21850NANA4+12357314..12357610hypothetical protein
LOC_Os04g21860Os.25411.1.A1_at11/114+12360704..12362603transposon protein, putative, Pong sub-class, expressed
LOC_Os04g21870NANA4+12363087..12364439transposon protein, putative, Pong sub-class
LOC_Os04g21880OsAffx.26088.1.S1_at10/114+12367980..12370159hypothetical protein
LOC_Os04g21890OsAffx.3850.1.S1_at11/114+12371400..12374198NB-ARC domain containing protein, expressed
LOC_Os04g21900OsAffx.13914.1.S1_at11/114+12375742..12378182hypothetical protein
LOC_Os04g21910OsAffx.13915.1.S1_at11/114+12381592..12383153pentatricopeptide, putative
LOC_Os04g21920NANA4+12387667..12388383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.14491.2.S1_x_at2/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.47463.1.S1_x_at1/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21940OsAffx.26090.1.S1_at11/114+12399031..12399405hypothetical protein
LOC_Os04g21950Os.49656.1.S1_at11/114+12400846..12402244WRKY DNA binding domain containing protein, expressed
LOC_Os04g21960NANA4+12406392..12409955retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13915.1.S1_at--616--8831Chr04:12381905..12381929 (25 bp)
TGATTTCTTCATTTGTTCCCAGTGT
LOC_Os04g21910
OsAffx.13915.1.S1_at--263--6711Chr04:12381919..12381943 (25 bp)
GTTCCCAGTGTTAACATGCTGCAAG
LOC_Os04g21910
OsAffx.13915.1.S1_at--14--3431Chr04:12381960..12381984 (25 bp)
CAGAGAACTTGGTGTGCTACGGCTA
LOC_Os04g21910
OsAffx.13915.1.S1_at--913--1131Chr04:12382042..12382066 (25 bp)
AGTGCCTTGGAGACATCCATCGTTA
LOC_Os04g21910
OsAffx.13915.1.S1_at--880--9351Chr04:12382061..12382085 (25 bp)
TCGTTAAACTTTATGCTAGCTGTGG
LOC_Os04g21910
OsAffx.13915.1.S1_at--1153--3131Chr04:12382093..12382117 (25 bp)
AATTCGGCGCAAAGGTGCTTCGACA
LOC_Os04g21910
OsAffx.13915.1.S1_at--909--3491Chr04:12382490..12382514 (25 bp)
CATGTGGTGTTCAGCAATGCCCGAG
LOC_Os04g21910
OsAffx.13915.1.S1_at--1127--3011Chr04:12382505..12382529 (25 bp)
AATGCCCGAGCTGGTAGTGATCGAT
LOC_Os04g21910
OsAffx.13915.1.S1_at--340--6331Chr04:12383006..12383030 (25 bp)
GATGCAGCAGCTTGGGTACTTCACA
LOC_Os04g21910
OsAffx.13915.1.S1_at--176--7851Chr04:12383020..12383044 (25 bp)
GGTACTTCACATTTGCAAGGCGCAG
LOC_Os04g21910
OsAffx.13915.1.S1_at--740--811Chr04:12383087..12383111 (25 bp)
ATGGTGTCACTCTCACAAGCCAAGG
LOC_Os04g21910
Target Sequence 
TGATTTCTTCATTTGTTCCCAGTGTTAACATGCTGCAAGGATTAGTCATCAGTTACAGAGAACTTGGTGTGCTACGGCTA
GGTAAAGCAACTCATGGGTATATGATAAGAAACAGTTATGATGCACAATCTGAGAATAGTGCCTTGGAGACATCCATCGT
TAAACTTTATGCTAGCTGTGGGAGCATTAATTCGGCGCAAAGGTGCTTCGACAGCATCCATCAGAAAGATATTGTTGCAT
GGAGTTCGATGATTGAAGCATACACGATCCATGGCTATGGTAATGTTGGCTACCATGTGGTGTTCAGCAATGCCCGAGCT
GGTAGTGATCGATGGGATGAAGTTGAAAGCATTAGAAGCTCTATGATGCAGCAGCTTGGGTACTTCACATTTGCAAGGCG
CAGATCGAAAATGAAGAGCTGCTGTGAAGTGGCAGGAGTGTGGTCATGGTGTCACTCTCACAAGCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis