Browse Element(s) Details


OsAffx.3850.1.S1_at

Description tigr:9632.m02016
TID=OsAffx.3850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative disease resistance protein RPR1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2189011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21830NANA4+12350982..12352670hypothetical protein
LOC_Os04g21840OsAffx.3849.1.S1_at11/114+12354545..12354991hypothetical protein
LOC_Os04g21850NANA4+12357314..12357610hypothetical protein
LOC_Os04g21860Os.25411.1.A1_at11/114+12360704..12362603transposon protein, putative, Pong sub-class, expressed
LOC_Os04g21870NANA4+12363087..12364439transposon protein, putative, Pong sub-class
LOC_Os04g21880OsAffx.26088.1.S1_at10/114+12367980..12370159hypothetical protein
LOC_Os04g21890OsAffx.3850.1.S1_at11/114+12371400..12374198NB-ARC domain containing protein, expressed
LOC_Os04g21900OsAffx.13914.1.S1_at11/114+12375742..12378182hypothetical protein
LOC_Os04g21910OsAffx.13915.1.S1_at11/114+12381592..12383153pentatricopeptide, putative
LOC_Os04g21920NANA4+12387667..12388383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.14491.2.S1_x_at2/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.47463.1.S1_x_at1/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21940OsAffx.26090.1.S1_at11/114+12399031..12399405hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3850.1.S1_at--726--8151Chr04:12373643..12373667 (25 bp)
GGAAATACTTGACCTGGACATCAGT
LOC_Os04g21890
OsAffx.3850.1.S1_at--222--1511Chr04:12373677..12373701 (25 bp)
AGCACCCTTGAGAAGCTTTGCCTGA
LOC_Os04g21890
OsAffx.3850.1.S1_at--451--8831Chr04:12373715..12373739 (25 bp)
TGATTCTAATCTGCACTCTTTCTTC
LOC_Os04g21890
OsAffx.3850.1.S1_at--1154--3751Chr04:12373730..12373754 (25 bp)
CTCTTTCTTCAATTCCTTTTGCAAC
LOC_Os04g21890
OsAffx.3850.1.S1_at--279--3751Chr04:12373758..12373782 (25 bp)
CTCACATGTCTTTTTCTTGGTTGGA
LOC_Os04g21890
OsAffx.3850.1.S1_at--694--671Chr04:12373821..12373845 (25 bp)
ATGACAAATCTTGCATTCCTCTGGC
LOC_Os04g21890
OsAffx.3850.1.S1_at--1054--6211Chr04:12373860..12373884 (25 bp)
GATGGCCCGCAGTTGAGGTTTGTTC
LOC_Os04g21890
OsAffx.3850.1.S1_at--1135--5651Chr04:12373923..12373947 (25 bp)
GACATGGACCATCTTCATTCTTTGG
LOC_Os04g21890
OsAffx.3850.1.S1_at--138--10211Chr04:12374015..12374039 (25 bp)
TATTCCCGGAGGTATTTTCTTTCTG
LOC_Os04g21890
OsAffx.3850.1.S1_at--89--6151Chr04:12374052..12374076 (25 bp)
GAGGTGTACCTCGATTCAATGCACA
LOC_Os04g21890
OsAffx.3850.1.S1_at--447--8131Chr04:12374078..12374102 (25 bp)
GGACTTCATTAACCACCAGAGCGAG
LOC_Os04g21890
Target Sequence 
GGAAATACTTGACCTGGACATCAGTCCACCGCCAAGCACCCTTGAGAAGCTTTGCCTGAGGGGAAAACTGAATGATTCTA
ATCTGCACTCTTTCTTCAATTCCTTTTGCAACAATCTCACATGTCTTTTTCTTGGTTGGAGTAGTCTAAGCAGAGACCCC
CTCCCATTGTTGTCCCAGATGACAAATCTTGCATTCCTCTGGCTCCAACGGGCATTCGATGGCCCGCAGTTGAGGTTTGT
TCTGGGATGGTTCCCAAGATTGAGAAGGCTGCATCTGAAAGACATGGACCATCTTCATTCTTTGGAGATTGAAGAAGGTT
CAGTGGTCAGTTTGGAGGTGCTGGAGATGACTGGTCTTAATGAGTTGAATGATATTCCCGGAGGTATTTTCTTTCTGAAC
AATCTTCAAGAGGTGTACCTCGATTCAATGCACAAGGACTTCATTAACCACCAGAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis