Browse Element(s) Details


OsAffx.3849.1.S1_at

Description tigr:9632.m02011
TID=OsAffx.3849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2184011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21810NANA4+12334394..12334996transposon protein, putative, unclassified
LOC_Os04g21820Os.27099.1.S1_at11/114+12339714..12344921Protein kinase domain containing protein, expressed
LOC_Os04g21830NANA4+12350982..12352670hypothetical protein
LOC_Os04g21840OsAffx.3849.1.S1_at11/114+12354545..12354991hypothetical protein
LOC_Os04g21850NANA4+12357314..12357610hypothetical protein
LOC_Os04g21860Os.25411.1.A1_at11/114+12360704..12362603transposon protein, putative, Pong sub-class, expressed
LOC_Os04g21870NANA4+12363087..12364439transposon protein, putative, Pong sub-class
LOC_Os04g21880OsAffx.26088.1.S1_at10/114+12367980..12370159hypothetical protein
LOC_Os04g21890OsAffx.3850.1.S1_at11/114+12371400..12374198NB-ARC domain containing protein, expressed
LOC_Os04g21900OsAffx.13914.1.S1_at11/114+12375742..12378182hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3849.1.S1_at--938--1031Chr04:12354932..12354956 (25 bp)
AGGTGCCGCGGCCAGGCTGTGCAGT
LOC_Os04g21840
OsAffx.3849.1.S1_at--19--911Chr04:12354919..12354943 (25 bp)
AGGCTGTGCAGTTGGCGGCGCCGAT
LOC_Os04g21840
OsAffx.3849.1.S1_at--1034--3931Chr04:12354877..12354901 (25 bp)
CGGCGGCTTTTCGAATCTGGAGTCG
LOC_Os04g21840
OsAffx.3849.1.S1_at--240--3051Chr04:12354864..12354888 (25 bp)
AATCTGGAGTCGAGGGATGCTTTGC
LOC_Os04g21840
OsAffx.3849.1.S1_at--991--9371Chr04:12354855..12354879 (25 bp)
TCGAGGGATGCTTTGCGGTCAGCAT
LOC_Os04g21840
OsAffx.3849.1.S1_at--138--7831Chr04:12354839..12354863 (25 bp)
GGTCAGCATCCGACAGGACGGCCCA
LOC_Os04g21840
OsAffx.3849.1.S1_at--95--5751Chr04:12354823..12354847 (25 bp)
GACGGCCCACGCATCGGCTACGAGG
LOC_Os04g21840
OsAffx.3849.1.S1_at--283--3551Chr04:12354812..12354836 (25 bp)
CATCGGCTACGAGGCGGGCGGCATG
LOC_Os04g21840
OsAffx.3849.1.S1_at--368--5871Chr04:12354744..12354768 (25 bp)
GAGCGGTTGAGCAGGTCGGAGGCTT
LOC_Os04g21840
OsAffx.3849.1.S1_at--126--3951Chr04:12354728..12354752 (25 bp)
CGGAGGCTTGGCGATAGTAAGATTC
LOC_Os04g21840
OsAffx.3849.1.S1_at--11--4051Chr04:12354717..12354741 (25 bp)
CGATAGTAAGATTCGATGACGGCGG
LOC_Os04g21840
Target Sequence 
AGGTGCCGCGGCCAGGCTGTGCAGTTGGCGGCGCCGATGGCTGAGGCGGCGGCGGCGGCGGCTTTTCGAATCTGGAGTCG
AGGGATGCTTTGCGGTCAGCATCCGACAGGACGGCCCACGCATCGGCTACGAGGCGGGCGGCATGGGAGAAGGCGGGATA
GCAGGGGTCAAGGGGGTGAGAGCAGAGAGAGCGGTTGAGCAGGTCGGAGGCTTGGCGATAGTAAGATTCGATGACGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis