Browse Element(s) Details


Os.49677.1.S1_at

Description gb:AK120669.1
DB_XREF= gi:37990292
TID=Os.49677.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160D04, full insert sequence.
FL= gb:AK120669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0760011/11ABC transporter protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07570OsAffx.30865.1.S1_at11/1111+3825735..3827323hypothetical protein
LOC_Os11g07580OsAffx.7038.1.S1_s_at11/1111+3829992..3830656expressed protein
LOC_Os11g07590NANA11+3844020..3844562hypothetical protein
LOC_Os11g07600Os.49677.1.S1_at11/1111+3849473..3853184ABC transporter protein, putative, expressed
LOC_Os11g07609NANA11+3863627..3863913NA

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49677.1.S1_at--186--871Chr11:3849986..3850010 (25 bp)
ATGGCGTGGGCCAAGTACACCTCCT
LOC_Os11g07600
Os.49677.1.S1_at--698--9091Chr11:3849940..3849964 (25 bp)
TGCTCATCGCCGTGCAGTACAGCGG
LOC_Os11g07600
Os.49677.1.S1_at--989--3791Chr11:3849800..3849824 (25 bp)
CTCCGCCGGGTCAGGAAGTGATCGA
LOC_Os11g07600
Os.49677.1.S1_at--1056--5311Chr11:3849786..3849810 (25 bp)
GAAGTGATCGAGCACCTTGGTTCGA
LOC_Os11g07600
Os.49677.1.S1_at--750--531Chr11:3849762..3849786 (25 bp)
ATCGCCGCCCGTGGTAATTAGGTAG
LOC_Os11g07600
Os.49677.1.S1_at--154--71Chr11:3849721..3849745 (25 bp)
ATTCCGGCGAAGTGTAATCAAAGAC
LOC_Os11g07600
Os.49677.1.S1_at--53--391Chr11:3849705..3849729 (25 bp)
ATCAAAGACGTAACGCCGGCGAGCG
LOC_Os11g07600
Os.49677.1.S1_at--1141--2751Chr11:3849649..3849673 (25 bp)
AAGACGTACGGCTCGATCTGACAAT
LOC_Os11g07600
Os.49677.1.S1_at--497--8551Chr11:3849608..3849632 (25 bp)
TGGAGATCGACCATGGCTTCTGCCT
LOC_Os11g07600
Os.49677.1.S1_at--346--10611Chr11:3849542..3849566 (25 bp)
TTCTGTTTTTCTCCTGATCCATTGA
LOC_Os11g07600
Os.49677.1.S1_at--25--7451Chr11:3849508..3849532 (25 bp)
GTGTCAAGTGTATTATTACTGCCAA
LOC_Os11g07600
Target Sequence 
ATGGCGTGGGCCAAGTACACCTCCTTCACCTACTACTGCTACCGGCTGCTCATCGCCGTGCAGTACAGCGGCCGCCTCGC
CCGCCTCCTCCCGCCGGAGGAGGCCCGCGGCGAGGCCAGCCCGGCCGCCTGCGTCGCCGCGCTCGTCGCCATGTTCTTCG
CCTACCGGCTGCTCGCCTACCTCGCGCTCCGCCGGGTCAGGAAGTGATCGAGCACCTTGGTTCGATCGCCGCCCGTGGTA
ATTAGGTAGTAAGCTCTATTAATTAATTCCGGCGAAGTGTAATCAAAGACGTAACGCCGGCGAGCGAGCGAGCTAGCGTG
CGCCGCCGGCGACGGAGAAGACGTACGGCTCGATCTGACAATGGTGTAGTTGTTGGCATGGAGATCGACCATGGCTTCTG
CCTTCTTCTCGTCCTCTTCGTTTTAATTTTTTTTTCTTTCTTTTTTCTGTTTTTCTCCTGATCCATTGATGGATCGAGGT
GTCAAGTGTATTATTACTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis