Browse Element(s) Details


OsAffx.7038.1.S1_s_at

Description tigr:9639.m00696
TID=OsAffx.7038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0758011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07510OsAffx.7036.1.S1_at11/1111+3804768..3808515Plant protein family protein
LOC_Os11g07520NANA11+3809206..3811755retrotransposon protein, putative, unclassified
LOC_Os11g07530OsAffx.30864.1.S1_at10/1111+3813721..3815661hypothetical protein
LOC_Os11g07540OsAffx.7037.1.S1_at11/1111+3817727..3819518hypothetical protein
LOC_Os11g07550OsAffx.30864.2.S1_at10/1111+3820417..3822034hypothetical protein
LOC_Os11g07560OsAffx.29033.1.S1_at1/1111+3823371..3824145hypothetical protein
LOC_Os11g07570OsAffx.30865.1.S1_at11/1111+3825735..3827323hypothetical protein
LOC_Os11g07580OsAffx.7038.1.S1_s_at11/1111+3829992..3830656expressed protein
LOC_Os11g07590NANA11+3844020..3844562hypothetical protein
LOC_Os11g07600Os.49677.1.S1_at11/1111+3849473..3853184ABC transporter protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7038.1.S1_s_at--1026--5771Chr11:3830296..3830320 (25 bp)
GACGAGCATCACGAGCTTAGCTAAG
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--975--4891Chr11:3830282..3830306 (25 bp)
GCTTAGCTAAGCTTGGAGATCAAGA
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--1132--10771Chr11:3830220..3830244 (25 bp)
TTGATGATATGCTCTGCTTCTTGGA
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--149--731Chr11:3830217..3830241 (25 bp)
ATGATATGCTCTGCTTCTTGGAGGA
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--1086--6671Chr11:3830121..3830145 (25 bp)
GTTGCTGCAGTAGTAGATATATATT
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--872--7751Chr11:3830087..3830111 (25 bp)
GGTGTTGTTGAGAGCATGTGATCTA
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--775--5931Chr11:3830076..3830100 (25 bp)
GAGCATGTGATCTAGGAGTATTTGA
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--113--10451Chr11:3830051..3830075 (25 bp)
TTAGATGATTCATGCAGGTGATGCC
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--65--1051Chr11:3830036..3830060 (25 bp)
AGGTGATGCCTGACAGCTTCATCTG
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--667--6351Chr11:3830032..3830056 (25 bp)
GATGCCTGACAGCTTCATCTGTTAG
LOC_Os11g07580
OsAffx.7038.1.S1_s_at--956--3391Chr11:3830023..3830047 (25 bp)
CAGCTTCATCTGTTAGACAATTGGA
LOC_Os11g07580
Target Sequence 
GACGAGCATCACGAGCTTAGCTAAGCTTGGAGATCAAGATTAATTTTACGATTTTTTTTTTGTTGTTGTTGTTTGATTGA
TGATATGCTCTGCTTCTTGGAGGAAAAAAAATTCGTTACATGCCCAAAAAAAATTAAGAAAATATTTCCTTTTCTTTGCT
CGAGTTTTTTTTTTTGTTGCTGCAGTAGTAGATATATATTATTAGGAGAGGTGTTGTTGAGAGCATGTGATCTAGGAGTA
TTTGATTAGATGATTCATGCAGGTGATGCCTGACAGCTTCATCTGTTAGACAATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7038.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis