Browse Element(s) Details


Os.4968.1.S1_at

Description gb:AK072932.1
DB_XREF= gi:32982955
TID=Os.4968.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144J15, full insert sequence.
FL= gb:AK072932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3601011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36000OsAffx.15769.1.S1_at11/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36000OsAffx.24232.1.S1_at2/116+21039439..21040540AP2 domain containing protein
LOC_Os06g36010Os.4968.1.S1_at11/116+21047728..21048726Plastocyanin-like domain containing protein, expressed
LOC_Os06g36020NANA6+21054964..21058845retrotransposon protein, putative, unclassified
LOC_Os06g36030OsAffx.5025.1.S1_at4/116+21060009..21061010SWIM zinc finger family protein, expressed
LOC_Os06g36040NANA6+21062305..21062946expressed protein
LOC_Os06g36050Os.5208.1.S1_at11/116+21065265..21068929expressed protein
LOC_Os06g36060NANA6+21072819..21078104hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4968.1.S1_at--902--8131Chr06:21048299..21048323 (25 bp)
GGACAAGTTCGGGTACTACCACTGC
LOC_Os06g36010
Os.4968.1.S1_at--1065--9671Chr06:21047963..21047987 (25 bp)
TCACGCATTGCTCCTGGCCGCGATG
LOC_Os06g36010
Os.4968.1.S1_at--299--3511Chr06:21047936..21047960 (25 bp)
CATGATGGGCTTGATTCTTGGAGAG
LOC_Os06g36010
Os.4968.1.S1_at--131--7511Chr06:21047912..21047936 (25 bp)
GTGGTAGTAACAACAGAGTTTGCAT
LOC_Os06g36010
Os.4968.1.S1_at--1054--1231Chr06:21047885..21047909 (25 bp)
AGCTAGGCCATCAGGGTGTTAGTTA
LOC_Os06g36010
Os.4968.1.S1_at--465--991Chr06:21047857..21047881 (25 bp)
AGGATGGTTAATTACTTCGGTGCAG
LOC_Os06g36010
Os.4968.1.S1_at--808--2051Chr06:21047844..21047868 (25 bp)
ACTTCGGTGCAGTATGGAACGTACT
LOC_Os06g36010
Os.4968.1.S1_at--101--10071Chr06:21047832..21047856 (25 bp)
TATGGAACGTACTGGCTGGAGCTTA
LOC_Os06g36010
Os.4968.1.S1_at--650--8531Chr06:21047816..21047840 (25 bp)
TGGAGCTTAATTACCGTCGCTGAAC
LOC_Os06g36010
Os.4968.1.S1_at--827--10451Chr06:21047806..21047830 (25 bp)
TTACCGTCGCTGAACTGAATAATTT
LOC_Os06g36010
Os.4968.1.S1_at--120--1231Chr06:21047762..21047786 (25 bp)
AGTTGTTGATTTGTCGCTTTAGAAT
LOC_Os06g36010
Target Sequence 
GGACAAGTTCGGGTACTACCACTGCAACGCGACGGCGGCGGCGGCCAACGACGGCAGCGTGCTCTTCCTCCNCGNCGCCN
NCGNCNNCNCCNNCNNCNNCNNCNNNNNCGNNNNNNNCTGCNNNNNNGNCNNNNGCCNCNNNANCNNCGNCGNCNCCGCC
NCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGNCGAGCGCCGCAACGTCGTCGTCGGCGGCG
ACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGCCATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTT
GCATTNGAGCTAGGCCATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGGCTGGA
GCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTGTTGATTTGTCGCTTTAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis