Browse Element(s) Details


Os.49700.1.S1_at

Description gb:AK107971.1
DB_XREF= gi:32993180
TID=Os.49700.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D07, full insert sequence.
FL= gb:AK107971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1474011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14690OsAffx.14694.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14690OsAffx.14695.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14700OsAffx.4337.1.S1_at11/115+8334786..8335061hypothetical protein
LOC_Os05g14710OsAffx.26888.1.S1_at11/115+8337768..8338391hypothetical protein
LOC_Os05g14720NANA5+8342908..8343768hypothetical protein
LOC_Os05g14730Os.14260.1.A1_at11/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14730OsAffx.26890.1.S1_at1/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14740Os.49700.1.S1_at11/115+8354097..8356143expressed protein
LOC_Os05g14740OsAffx.21636.1.S1_x_at1/115+8354097..8356143expressed protein
LOC_Os05g14750Os.5636.1.S1_at11/115+8358207..8361726Protein kinase PVPK-1, putative, expressed
LOC_Os05g14760NANA5+8362353..8362703hypothetical protein
LOC_Os05g14770OsAffx.26892.1.S1_at11/115+8366366..8367754hypothetical protein
LOC_Os05g14780NANA5+8371221..8374737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14790OsAffx.29786.1.S1_x_at1/115+8375229..8379131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14790OsAffx.23450.1.S1_at1/115+8375229..8379131retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49700.1.S1_at--460--2091Chr05:8354493..8354517 (25 bp)
ACATAGCTATTGTTAGGTTCCTTGA
LOC_Os05g14740
Os.49700.1.S1_at--1078--10251Chr05:8354345..8354369 (25 bp)
TTTGTTGTGCATTGTGAACCCCTGT
LOC_Os05g14740
Os.49700.1.S1_at--394--10771Chr05:8354334..8354358 (25 bp)
TTGTGAACCCCTGTTAGTAACTTAT
LOC_Os05g14740
Os.49700.1.S1_at--604--7851Chr05:8354284..8354308 (25 bp)
GGTAGTCAGTGAGCAAGTCAGTCAA
LOC_Os05g14740
Os.49700.1.S1_at--1040--351Chr05:8354256..8354280 (25 bp)
ATAATCTCCATATATGTTCCAGCAA
LOC_Os05g14740
Os.49700.1.S1_at--1151--6671Chr05:8354241..8354265 (25 bp)
GTTCCAGCAAATACTTGGGCTGCCC
LOC_Os05g14740
Os.49700.1.S1_at--655--3211Chr05:8354217..8354241 (25 bp)
CAAGTCCGTTAGTTCTTGTCCCTTG
LOC_Os05g14740
Os.49700.1.S1_at--151--3631Chr05:8354196..8354220 (25 bp)
CTTGCACATGTTCACACTAGTCCAA
LOC_Os05g14740
Os.49700.1.S1_at--401--7351Chr05:8354168..8354192 (25 bp)
GTGAATCCGATCTTGTACTTTGGTT
LOC_Os05g14740
Os.49700.1.S1_at--113--9571Chr05:8354140..8354164 (25 bp)
TCTTCCCTCGTTTCACAGACTAGTA
LOC_Os05g14740
Os.49700.1.S1_at--1117--1391Chr05:8354124..8354148 (25 bp)
AGACTAGTACCACGGCCACCAAGAA
LOC_Os05g14740
Target Sequence 
ACATAGCTATTGTTAGGTTCCTTGAATACTGAAAGTTCATACTTTGATCTTCAGATAATGGTGAGTAATTTCTTCTGAAT
GCTCTTCAATTACAAAATAAAAAATTAAGTTACTCTGATACTCAAATTTTTACATGGTTACTTTTTTCTTTGTTGTGCAT
TGTGAACCCCTGTTAGTAACTTATAACCATTGAAATATCTTATACAAATGGTAGTCAGTGAGCAAGTCAGTCAAAAAATA
ATCTCCATATATGTTCCAGCAAATACTTGGGCTGCCCAAGTCCGTTAGTTCTTGTCCCTTGCACATGTTCACACTAGTCC
AAGATGTGAATCCGATCTTGTACTTTGGTTTTCTCTTCCCTCGTTTCACAGACTAGTACCACGGCCACCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis