Browse Element(s) Details


Os.49706.1.S1_at

Description gb:AK069256.1
DB_XREF= gi:32979280
TID=Os.49706.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H09, full insert sequence.
FL= gb:AK069256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0488011/11prenylated rab acceptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04850NANA9+2579306..2581998retrotransposon protein, putative, unclassified
LOC_Os09g04860OsAffx.29722.1.S1_at11/119+2585421..2586290hypothetical protein
LOC_Os09g04860Os.49312.1.A1_at1/119+2585421..2586290hypothetical protein
LOC_Os09g04870OsAffx.29723.1.S1_at10/119+2586837..2588885hypothetical protein
LOC_Os09g04880Os.49706.1.S1_at11/119+2596219..2599726prenylated rab acceptor, putative, expressed
LOC_Os09g04890Os.7059.2.S1_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.2.S1_x_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.1.S1_at11/119+2600653..2614920trithorax 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49706.1.S1_at--236--10731Chr09:2599046..2599070 (25 bp)
TTGCTCTTGTATATGCCATTGGGTT
LOC_Os09g04880
Os.49706.1.S1_at--285--6291Chr09:2599166..2599190 (25 bp)
GATGTTGCATGCTTCTTTTCGAAAA
LOC_Os09g04880
Os.49706.1.S1_at--663--10491Chr09:2599199..2599223 (25 bp)
TTCAAGTCTACCTGATCCTGGGAAC
LOC_Os09g04880
Os.49706.1.S1_at--399--5731Chr09:2599305..2599329 (25 bp)
GACTGCAGATGCACCAGACAGGTAT
LOC_Os09g04880
Os.49706.1.S1_at--87--9791Chr09:2599329..2599353 (25 bp)
TAAGTTATAACAGCCCACATGGTGC
LOC_Os09g04880
Os.49706.1.S1_at--935--6911Chr09:2599363..2599387 (25 bp)
GTAGTCACCTATATCAGCACTGGTT
LOC_Os09g04880
Os.49706.1.S1_at--146--1411Chr09:2599410..2599434 (25 bp)
AGACTGCATTTTGGACTCGTTCAAG
LOC_Os09g04880
Os.49706.1.S1_at--425--3771Chr09:2599425..2599449 (25 bp)
CTCGTTCAAGAGTTAGTCGTGGTCG
LOC_Os09g04880
Os.49706.1.S1_at--77--5731Chr09:2599474..2599498 (25 bp)
GACGGTAGCGTCATTTTGATCCAAT
LOC_Os09g04880
Os.49706.1.S1_at--323--3711Chr09:2599552..2599576 (25 bp)
CTAGAATATACCTTCGTGGCAAATA
LOC_Os09g04880
Os.49706.1.S1_at--525--3991Chr09:2599566..2599590 (25 bp)
CGTGGCAAATATTAGCTGAGCTCTC
LOC_Os09g04880
Target Sequence 
TTGCTCTTGTATATGCCATTGGGTTGAGTTATGCAGTGATGATGTTGCATGCTTCTTTTCGAAAATTGACTCCTTCAAGT
CTACCTGATCCTGGGAACAGAAACAGGAGGTTGCAACCAAAACGAAGCTAATTGATTCATCAGAGAAAAATAATAAAAAG
AAAGCCATAATTCATGACAGACTGCAGATGCACCAGACAGGTATAAGTTATAACAGCCCACATGGTGCGAATGCAAAGTA
GTCACCTATATCAGCACTGGTTAGTGGGTACTGTTGGAGGCTCGAGACTGCATTTTGGACTCGTTCAAGAGTTAGTCGTG
GTCGAAGTTTGTTGACGAAACGGAATATGACGGTAGCGTCATTTTGATCCAATTTGATCTGATCTAATGGCATGAGAGCA
AATGGTTAATTTTTATAGGTGTTCAACTAGAATATACCTTCGTGGCAAATATTAGCTGAGCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis