Browse Element(s) Details


Os.7059.1.S1_at

Description gb:AK074022.1
DB_XREF= gi:32984045
TID=Os.7059.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074A15, full insert sequence.
FL= gb:AK074022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0489011/11trithorax 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04850NANA9+2579306..2581998retrotransposon protein, putative, unclassified
LOC_Os09g04860OsAffx.29722.1.S1_at11/119+2585421..2586290hypothetical protein
LOC_Os09g04860Os.49312.1.A1_at1/119+2585421..2586290hypothetical protein
LOC_Os09g04870OsAffx.29723.1.S1_at10/119+2586837..2588885hypothetical protein
LOC_Os09g04880Os.49706.1.S1_at11/119+2596219..2599726prenylated rab acceptor, putative, expressed
LOC_Os09g04890Os.7059.2.S1_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.2.S1_x_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.1.S1_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04900Os.43567.1.S1_x_at4/119+2625100..2625651transposon protein, putative, unclassified
LOC_Os09g04910NANA9+2629330..2629644hypothetical protein
LOC_Os09g04920OsAffx.5805.1.S1_at1/119+2633641..2635533retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7059.1.S1_at--666--5871Chr09:2602363..2602386 (24 bp)
GAGCCGAATTGTTATTCACGCGTCA
LOC_Os09g04890
Os.7059.1.S1_at--937--10511Chr09:2602349..2602373 (25 bp)
TTCACGCGTCATAAGTGTTCTCGGG
LOC_Os09g04890
Os.7059.1.S1_at--1139--8831Chr09:2602170..2602194 (25 bp)
TGATCAGCGACTTCCTTGTTATTGT
LOC_Os09g04890
Os.7059.1.S1_at--29--10851Chr09:2602149..2602173 (25 bp)
TTGTGGATTCCCAAAATGCCGTGGA
LOC_Os09g04890
Os.7059.1.S1_at--1150--6371Chr09:2600933..2600957 (25 bp)
GATCGTATTTAGAATTGCCCCAGGG
LOC_Os09g04890
Os.7059.1.S1_at--224--9931Chr09:2600908..2600932 (25 bp)
TACTGGATTGCGAACTGTGCTCCTT
LOC_Os09g04890
Os.7059.1.S1_at--728--2251Chr09:2600860..2600884 (25 bp)
AAATTTGCCTCAGTTTTTCATGTGA
LOC_Os09g04890
Os.7059.1.S1_at--423--3571Chr09:2600769..2600793 (25 bp)
CATAGGTCTGGCATTCCATTTGTTA
LOC_Os09g04890
Os.7059.1.S1_at--287--31Chr09:2600733..2600757 (25 bp)
ATTGGAACTTACTTTGTGGTGGCAT
LOC_Os09g04890
Os.7059.1.S1_at--501--7071Chr09:2600683..2600707 (25 bp)
GTAATTTGTCCATTTGTCATCAGTT
LOC_Os09g04890
Os.7059.1.S1_at--82--411Chr09:2600665..2600689 (25 bp)
ATCAGTTATATGTTGGCCCTATCAA
LOC_Os09g04890
Target Sequence 
GAGCCGAATTGTTATTCACGCGTCATAAGTGTTCTCGGGGATGAGCATATCATCATTTTTGCAAAGCGGGATATAAATCC
ATGGGAAGAGTTGACTTATGATTATAGGTTTGTTTCGAGTGATCAGCGACTTCCTTGTTATTGTGGATTCCCAAAATGCC
GTGGAGTTGTTAACGATGTTGAAGCAGAGGGGCAATCAGCCAAAATAAGGGTCAATAGAAGTGAATTATTTCAACAATGA
TCAGACTGAGGGATCGTATTTAGAATTGCCCCAGGGTACTGGATTGCGAACTGTGCTCCTTCGGGGCTAGTGGCAAAATT
GCAAAAATTTGCCTCAGTTTTTCATGTGAGANATGCTAATTATTCTTTGCTCACATTTACACAAGAATGCCATCGTAATT
GTACATCTATTCTGACATAGGTCTGGCATTCCATTTGTTATTGGTACCATAATTGGAACTTACTTTGTGGTGGCATAATC
AAAATATTCAGATCTTCTCATGTAATTTGTCCATTTGTCATCAGTTATATGTTGGCCCTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis