Browse Element(s) Details


OsAffx.29723.1.S1_at

Description tigr:9637.m00334
TID=OsAffx.29723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0487010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04810Os.26358.1.S1_x_at11/119+2560858..2564526expressed protein
LOC_Os09g04810Os.26358.2.S1_at10/119+2560858..2564526expressed protein
LOC_Os09g04820OsAffx.25156.5.S1_x_at11/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.1.S1_x_at5/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.4.S1_x_at1/119+2568301..2570428hypothetical protein
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04850NANA9+2579306..2581998retrotransposon protein, putative, unclassified
LOC_Os09g04860OsAffx.29722.1.S1_at11/119+2585421..2586290hypothetical protein
LOC_Os09g04860Os.49312.1.A1_at1/119+2585421..2586290hypothetical protein
LOC_Os09g04870OsAffx.29723.1.S1_at10/119+2586837..2588885hypothetical protein
LOC_Os09g04880Os.49706.1.S1_at11/119+2596219..2599726prenylated rab acceptor, putative, expressed
LOC_Os09g04890Os.7059.2.S1_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.2.S1_x_at11/119+2600653..2614920trithorax 1, putative, expressed
LOC_Os09g04890Os.7059.1.S1_at11/119+2600653..2614920trithorax 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29723.1.S1_at--203--6151NONE
GAGGTTTCAAGGATGAAGACACCAT
NONE
OsAffx.29723.1.S1_at--810--8991Chr09:2587005..2587029 (25 bp)
TGAAGACACCATCGCCAGGACACGG
LOC_Os09g04870
OsAffx.29723.1.S1_at--1002--4131Chr09:2586972..2586996 (25 bp)
CGCTGGACGCGATTGCCAAGAACCG
LOC_Os09g04870
OsAffx.29723.1.S1_at--57--6591Chr09:2586962..2586986 (25 bp)
GATTGCCAAGAACCGCTAGGCGACA
LOC_Os09g04870
OsAffx.29723.1.S1_at--870--2611Chr09:2586952..2586976 (25 bp)
AACCGCTAGGCGACAACATTTCACT
LOC_Os09g04870
OsAffx.29723.1.S1_at--504--8391Chr09:2586944..2586968 (25 bp)
GGCGACAACATTTCACTCTATGCAT
LOC_Os09g04870
OsAffx.29723.1.S1_at--111--3591Chr09:2586936..2586960 (25 bp)
CATTTCACTCTATGCATGGGAAGGA
LOC_Os09g04870
OsAffx.29723.1.S1_at--317--8051Chr09:2586914..2586938 (25 bp)
GGAGATTACAACGACATAAACCTGA
LOC_Os09g04870
OsAffx.29723.1.S1_at--482--2631Chr09:2586896..2586920 (25 bp)
AACCTGAGATTGGAAGCGAGGCCTC
LOC_Os09g04870
OsAffx.29723.1.S1_at--641--8171Chr09:2586885..2586909 (25 bp)
GGAAGCGAGGCCTCGTTCTCATATG
LOC_Os09g04870
OsAffx.29723.1.S1_at--822--9391Chr09:2586873..2586897 (25 bp)
TCGTTCTCATATGCCCAGAGCGAAA
LOC_Os09g04870
Target Sequence 
GAGGTTTCAAGGATGAAGACACCATCGCCAGGACACGGCGAGATGCCGCTGGACGCGATTGCCAAGAACCGCTAGGCGAC
AACATTTCACTCTATGCATGGGAAGGAGATTACAACGACATAAACCTGAGATTGGAAGCGAGGCCTCGTTCTCATATGCC
CAGAGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis