Browse Element(s) Details


Os.26358.2.S1_at

Description gb:AK069372.1
DB_XREF= gi:32979396
TID=Os.26358.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29966 putative myosin heavy chain mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010J11, full insert sequence.
FL= gb:AK069372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0481010/11expressed protein
LOC_Os03g317301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04770OsAffx.6176.1.S1_at11/119+2538390..2539148hypothetical protein
LOC_Os09g04780NANA9+2543661..2543897hypothetical protein
LOC_Os09g04790Os.11810.2.S1_a_at10/119+2548092..2551800Light-induced protein, chloroplast precursor, putative, expressed
LOC_Os09g04800Os.18469.1.S1_at11/119+2556031..2560139BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os09g04810Os.26358.1.S1_x_at11/119+2560858..2564526expressed protein
LOC_Os09g04810Os.26358.2.S1_at10/119+2560858..2564526expressed protein
LOC_Os09g04820OsAffx.25156.5.S1_x_at11/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.1.S1_x_at5/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.4.S1_x_at1/119+2568301..2570428hypothetical protein
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04850NANA9+2579306..2581998retrotransposon protein, putative, unclassified
LOC_Os09g04860OsAffx.29722.1.S1_at11/119+2585421..2586290hypothetical protein
LOC_Os09g04860Os.49312.1.A1_at1/119+2585421..2586290hypothetical protein
LOC_Os09g04870OsAffx.29723.1.S1_at10/119+2586837..2588885hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26358.2.S1_at--659--7572Chr03:18096030..18096114 (25 bp)
GGGATTAATGTATGAGTTTGACCAA
LOC_Os03g31730
Os.26358.2.S1_at--270--751Chr09:2560929..2560953 (25 bp)
ATGTATGAGTTTGACCAAGTGTGGT
LOC_Os09g04810
Os.26358.2.S1_at--38--3231Chr09:2560914..2560938 (25 bp)
CAAGTGTGGTTTACTGGTCATGGTC
LOC_Os09g04810
Os.26358.2.S1_at--994--7491Chr09:2560909..2560933 (25 bp)
GTGGTTTACTGGTCATGGTCTAATG
LOC_Os09g04810
Os.26358.2.S1_at--862--7811Chr09:2560899..2560923 (25 bp)
GGTCATGGTCTAATGATGTCACGAC
LOC_Os09g04810
Os.26358.2.S1_at--757--7131Chr09:2560892..2560916 (25 bp)
GTCTAATGATGTCACGACCTGAGCA
LOC_Os09g04810
Os.26358.2.S1_at--620--711Chr09:2560887..2560911 (25 bp)
ATGATGTCACGACCTGAGCATTGTA
LOC_Os09g04810
Os.26358.2.S1_at--612--6271Chr09:2560885..2560909 (25 bp)
GATGTCACGACCTGAGCATTGTATT
LOC_Os09g04810
Os.26358.2.S1_at--292--9691Chr09:2560881..2560905 (25 bp)
TCACGACCTGAGCATTGTATTTCTA
LOC_Os09g04810
Os.26358.2.S1_at--17--6891Chr09:2560865..2560889 (25 bp)
GTATTTCTATTGAGCAATGTGACAA
LOC_Os09g04810
Os.26358.2.S1_at--639--10231Chr09:2560858..2560882 (25 bp)
TATTGAGCAATGTGACAAACTGTGT
NONE
Target Sequence 
GGGATTAATGTATGAGTTTGACCAAGTGTGGTTTACTGGTCATGGTCTAATGATGTCACGACCTGAGCATTGTATTTCTA
TTGAGCAATGTGACAAACTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26358.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis