Browse Element(s) Details


Os.26358.1.S1_x_at

Description gb:AK060425.1
DB_XREF= gi:32970443
TID=Os.26358.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29966 putative myosin heavy chain mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H09, full insert sequence.
FL= gb:AK060425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0481011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04770OsAffx.6176.1.S1_at11/119+2538390..2539148hypothetical protein
LOC_Os09g04780NANA9+2543661..2543897hypothetical protein
LOC_Os09g04790Os.11810.2.S1_a_at10/119+2548092..2551800Light-induced protein, chloroplast precursor, putative, expressed
LOC_Os09g04800Os.18469.1.S1_at11/119+2556031..2560139BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os09g04810Os.26358.1.S1_x_at11/119+2560858..2564526expressed protein
LOC_Os09g04810Os.26358.2.S1_at10/119+2560858..2564526expressed protein
LOC_Os09g04820OsAffx.25156.5.S1_x_at11/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.1.S1_x_at5/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.4.S1_x_at1/119+2568301..2570428hypothetical protein
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04850NANA9+2579306..2581998retrotransposon protein, putative, unclassified
LOC_Os09g04860OsAffx.29722.1.S1_at11/119+2585421..2586290hypothetical protein
LOC_Os09g04860Os.49312.1.A1_at1/119+2585421..2586290hypothetical protein
LOC_Os09g04870OsAffx.29723.1.S1_at10/119+2586837..2588885hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26358.1.S1_x_at--902--5851Chr09:2561898..2561922 (25 bp)
GAGCCTCCAATCTTCAGAAAGCTGA
LOC_Os09g04810
Os.26358.1.S1_x_at--234--231Chr09:2561699..2561723 (25 bp)
ATATTGCACTCGATCACTATTCTCC
LOC_Os09g04810
Os.26358.1.S1_x_at--680--9271Chr09:2561677..2561701 (25 bp)
TCCTGTCTTGCAGTACTACACTGGT
LOC_Os09g04810
Os.26358.1.S1_x_at--654--911Chr09:2561235..2561259 (25 bp)
AGGCTTGACAGCTTGACGGTTTGAC
LOC_Os09g04810
Os.26358.1.S1_x_at--253--8951Chr09:2561222..2561246 (25 bp)
TGACGGTTTGACTCTGCATTTATAG
LOC_Os09g04810
Os.26358.1.S1_x_at--524--7351Chr09:2561188..2561212 (25 bp)
GTGACTTTTGTAGATCATGCCCTTC
LOC_Os09g04810
Os.26358.1.S1_x_at--929--6431Chr09:2561176..2561200 (25 bp)
GATCATGCCCTTCTTTTGATGTCAA
LOC_Os09g04810
Os.26358.1.S1_x_at--579--2831Chr09:2561131..2561155 (25 bp)
AAGTAGTTTGCTCCCCATTTTAGAT
LOC_Os09g04810
Os.26358.1.S1_x_at--773--6971Chr09:2561096..2561120 (25 bp)
GTAGCCTTTGGCAGCTTGTAAATGA
LOC_Os09g04810
Os.26358.1.S1_x_at--322--3591Chr09:2561066..2561090 (25 bp)
CATTAGTTAGTCCTTGTATTGCGCT
LOC_Os09g04810
Os.26358.1.S1_x_at--873--6851Chr09:2561051..2561075 (25 bp)
GTATTGCGCTATTGATCCTATGGGT
LOC_Os09g04810
Target Sequence 
GAGCCTCCAATCTTCAGAAAGCTGAGCTCGAGGTAGATTTACTTGGTGATGAGGTTGAGGCATTAACAGATCTTCTTGCA
AAAATTTATATTGCACTCGATCACTATTCTCCTGTCTTGCAGTACTACACTGGTGTTATGGAGATCTTGAACATGATCAA
GAAACATTTAAACATGTCGAAATAAACTTATCCTTCATACTTATATCTGCTACTACAGTGTTAGCAAAGGCTTGACAGCT
TGACGGTTTGACTCTGCATTTATAGTAGTATGAGGTGACTTTTGTAGATCATGCCCTTCTTTTGATGTCAAATCAAGGGT
TAGGTGATGCAAAGTAGTTTGCTCCCCATTTTAGATAGTAGATTTGGTAGCCTTTGGCAGCTTGTAAATGAGCCAACATT
AGTTAGTCCTTGTATTGCGCTATTGATCCTATGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26358.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis