Browse Element(s) Details


Os.18469.1.S1_at

Description gb:AK101816.1
DB_XREF= gi:32987025
TID=Os.18469.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067C05, full insert sequence.
FL= gb:AK101816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0480011/11BadF/BadG/BcrA/BcrD ATPase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04750NANA9+2532705..2533927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04760OsAffx.17571.1.S1_at11/119+2534378..2534764hypothetical protein
LOC_Os09g04770OsAffx.6176.1.S1_at11/119+2538390..2539148hypothetical protein
LOC_Os09g04780NANA9+2543661..2543897hypothetical protein
LOC_Os09g04790Os.11810.2.S1_a_at10/119+2548092..2551800Light-induced protein, chloroplast precursor, putative, expressed
LOC_Os09g04800Os.18469.1.S1_at11/119+2556031..2560139BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os09g04810Os.26358.1.S1_x_at11/119+2560858..2564526expressed protein
LOC_Os09g04810Os.26358.2.S1_at10/119+2560858..2564526expressed protein
LOC_Os09g04820OsAffx.25156.5.S1_x_at11/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.1.S1_x_at5/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.4.S1_x_at1/119+2568301..2570428hypothetical protein
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04850NANA9+2579306..2581998retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18469.1.S1_at--998--5271Chr09:2559237..2559261 (25 bp)
GAATGGACCAATTTCCGCTTGTTTT
LOC_Os09g04800
Os.18469.1.S1_at--645--731Chr09:2559319..2559343 (25 bp)
ATGTATTTCCAAAGTCTTCCCAGGC
LOC_Os09g04800
Os.18469.1.S1_at--826--10631Chr09:2559354..2559692 (25 bp)
TTCGACCTGAGGTGGAACCAGCCAT
LOC_Os09g04800
Os.18469.1.S1_at--790--4431Chr09:2559688..2559712 (25 bp)
GCCATTGGTGCAGCATTACTAGCTT
LOC_Os09g04800
Os.18469.1.S1_at--1148--9891Chr09:2559704..2559728 (25 bp)
TACTAGCTTGGAACCATCATCGCAA
LOC_Os09g04800
Os.18469.1.S1_at--791--7651Chr09:2559825..2559849 (25 bp)
GGGATGGTCACACAGGCACATTCAT
LOC_Os09g04800
Os.18469.1.S1_at--1048--7992Chr09:2559889..2559913 (25 bp)
GGATGTGCTTTCTGTGAGTTGTGTA
LOC_Os09g04800
Os.18469.1.S1_at--661--6751Chr09:2559966..2559990 (25 bp)
GTTCACGACATTTGGTTCTAACTCT
LOC_Os09g04800
Os.18469.1.S1_at--106--3731Chr09:2559983..2560007 (25 bp)
CTAACTCTTGGTGACTTGTACGTGT
LOC_Os09g04800
Os.18469.1.S1_at--52--9971Chr09:2560070..2560094 (25 bp)
TACCTGTTCGGTTACCTTGTATCTG
LOC_Os09g04800
Os.18469.1.S1_at--617--51Chr09:2560114..2560138 (25 bp)
ATTGATTCAATCGTCACCTGCATTT
LOC_Os09g04800
Target Sequence 
GAATGGACCAATTTCCGCTTGTTTTGGTTGGAGGTGTTCTCGAAGGCAACAAAAAATGGAACATTAGTGGTGAGGTTGTA
AGATGTATTTCCAAAGTCTTCCCAGGCGTCCATCCTATTCGACCTGAGGTGGAACCAGCCATTGGTGCAGCATTACTAGC
TTGGAACCATCATCGCAAAGGACTGAAACTGGAAAACGGAAGTTGATCTCTAGCATATGGAATTTATTTCAACTGTAAAT
TACAGAACTGAACAGCCAGAGGATTAATAAGATTGGGATGGTCACACAGGCACATTCATCAGCATCAAGGTTGTTGCTGC
GTGAAGAGCGTTATGGATGGATGTGCTTTCTGTGAGTTGTGTAAGCGGGGAACAGATGCATTTCTTATGTAATTAGTTAC
CGTGTTCAAAGAATTGTTCACGACATTTGGTTCTAACTCTTGGTGACTTGTACGTGTGCTATTAGAGAGTTCCAAGGAAC
ATGTCTGAAATGAACAGGTCATGTTAAAATGTGTATTTTTACCTGTTCGGTTACCTTGTATCTGTATTTGGTCGAAATGC
TGAATTGATTCAATCGTCACCTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis