Browse Element(s) Details


Os.49849.1.S1_at

Description gb:AK111977.1
DB_XREF= gi:37988640
TID=Os.49849.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H12, full insert sequence.
FL= gb:AK111977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2701011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26970OsAffx.24503.1.S1_x_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970Os.54855.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970OsAffx.20809.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26980OsAffx.17917.1.S1_at11/119+16402806..16407046Cytochrome P450 family protein, expressed
LOC_Os09g26989NANA9+16408710..16409553NA
LOC_Os09g27000OsAffx.6079.1.S1_at1/119+16413732..16417998expressed protein
LOC_Os09g27010Os.49849.1.S1_at11/119+16421289..16424217Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os09g27020Os.51501.1.S2_x_at1/119+16434083..16434979hypothetical protein
LOC_Os09g27030Os.7860.1.S1_at9/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27030OsAffx.4696.1.S1_at1/119+16438141..16442625Cysteine proteinase 2 precursor, putative, expressed
LOC_Os09g27040Os.54874.1.S1_at10/119+16443341..16446966GEX1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49849.1.S1_at--966--6011Chr09:16421854..16421878 (25 bp)
GAGTGAGAACCCTAAGTCCAGGCCC
LOC_Os09g27010
Os.49849.1.S1_at--803--8011Chr09:16421821..16421845 (25 bp)
GGAGGTTGTCAAAGCCCTGGAGCCT
LOC_Os09g27010
Os.49849.1.S1_at--610--4271Chr09:16421806..16421830 (25 bp)
CCTGGAGCCTGTGCTTGGCATGGAT
LOC_Os09g27010
Os.49849.1.S1_at--785--811Chr09:16421787..16421811 (25 bp)
ATGGATGACTTCTTCCCAGTTGGCC
LOC_Os09g27010
Os.49849.1.S1_at--589--10871Chr09:16421768..16421792 (25 bp)
TTGGCCCATTTGTCTTCACTGTCAT
LOC_Os09g27010
Os.49849.1.S1_at--886--2631Chr09:16421667..16421691 (25 bp)
AACCATCAGGACAGGCATCGACAGA
LOC_Os09g27010
Os.49849.1.S1_at--377--1451Chr09:16421645..16421669 (25 bp)
AGAAGTACCCAGACTCGGCGATTCA
LOC_Os09g27010
Os.49849.1.S1_at--207--6571Chr09:16421626..16421650 (25 bp)
GATTCACGCTGGCATTGTGCTGCAT
LOC_Os09g27010
Os.49849.1.S1_at--136--3611Chr09:16421614..16421638 (25 bp)
CATTGTGCTGCATGACCGTGATGGT
LOC_Os09g27010
Os.49849.1.S1_at--853--5031Chr09:16421446..16421470 (25 bp)
GCAGAATGCCACATTTGATTGGGTT
LOC_Os09g27010
Os.49849.1.S1_at--433--7751Chr09:16421413..16421437 (25 bp)
GGTGTTGTCATTTTTTAGCTTTCTT
LOC_Os09g27010
Target Sequence 
GAGTGAGAACCCTAAGTCCAGGCCCACAATGAGGGAGGTTGTCAAAGCCCTGGAGCCTGTGCTTGGCATGGATGACTTCT
TCCCAGTTGGCCCATTTGTCTTCACTGTCATTGTGGAGGACGAGAAGGTGGTTAACATGAAGGTGGACATGAAGGTTGAG
GTTGAGGAGAAGAAAAACACTCACCAAAACCATCAGGACAGGCATCGACAGAAGTACCCAGACTCGGCGATTCACGCTGG
CATTGTGCTGCATGACCGTGATGGTGTCATCGGAGGAGGGTACACCGGTGCGCTGCGACGACACCGGAGGACGGCGAGCT
ACAACAAGGAGAGGGGAGCATAGGAATAGAGGTGGGGAACAGAGTAGGAGAAAAAGGTCATGCATGTACATATGCTGGTG
AGGGTGTGGCAGAATGCCACATTTGATTGGGTTTAGTTTTTGGTGTTGTCATTTTTTAGCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis