Browse Element(s) Details


OsAffx.17917.1.S1_at

Description tigr:9637.m02360
TID=OsAffx.17917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=elicitor-inducible cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2698011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26960Os.46776.1.S1_s_at11/119+16386751..16389390Cytochrome P450 family protein, expressed
LOC_Os09g26970OsAffx.24503.1.S1_x_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970Os.54855.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970OsAffx.20809.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26980OsAffx.17917.1.S1_at11/119+16402806..16407046Cytochrome P450 family protein, expressed
LOC_Os09g26989NANA9+16408710..16409553NA
LOC_Os09g27000OsAffx.6079.1.S1_at1/119+16413732..16417998expressed protein
LOC_Os09g27010Os.49849.1.S1_at11/119+16421289..16424217Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17917.1.S1_at--251--1591Chr09:16403356..16403380 (25 bp)
AGCTCCTCAGGAAGCCCGAGATGTT
LOC_Os09g26980
OsAffx.17917.1.S1_at--507--7971Chr09:16403310..16403334 (25 bp)
GGATCGCATTGTCGGCCATAGACGT
LOC_Os09g26980
OsAffx.17917.1.S1_at--756--2071Chr09:16403269..16403293 (25 bp)
ACATTCTTGATCTCCCCTATATTGA
LOC_Os09g26980
OsAffx.17917.1.S1_at--483--7051Chr09:16403237..16403261 (25 bp)
GTAAAAGAGACCATGCGCCTTCACC
LOC_Os09g26980
OsAffx.17917.1.S1_at--729--7851Chr09:16403158..16403182 (25 bp)
GGTATGACATACCTACGGGCACGCG
LOC_Os09g26980
OsAffx.17917.1.S1_at--683--9911Chr09:16403145..16403169 (25 bp)
TACGGGCACGCGTGTATTCGTTAAT
LOC_Os09g26980
OsAffx.17917.1.S1_at--759--8211Chr09:16403029..16403053 (25 bp)
GGCAAGACTTTGAGCTATTACCATT
LOC_Os09g26980
OsAffx.17917.1.S1_at--475--10451Chr09:16403012..16403036 (25 bp)
TTACCATTTGGGTCTGGTCGACGGA
LOC_Os09g26980
OsAffx.17917.1.S1_at--246--7791Chr09:16402997..16403021 (25 bp)
GGTCGACGGATGTGCCCAGGCTACA
LOC_Os09g26980
OsAffx.17917.1.S1_at--592--10771Chr09:16402949..16402973 (25 bp)
TTGAGCATAGCCAATCTCCTTCATG
LOC_Os09g26980
OsAffx.17917.1.S1_at--526--10211Chr09:16402867..16402891 (25 bp)
TATTCGGGTTATCCATGCCACGCAA
LOC_Os09g26980
Target Sequence 
AGCTCCTCAGGAAGCCCGAGATGTTTGCAAAGGCCACAGAGGAATTGGATCGCATTGTCGGCCATAGACGTTGGGTCAAC
GAGAAGGACATTCTTGATCTCCCCTATATTGAGGCTATTGTAAAAGAGACCATGCGCCTTCACCCTATCGGACCTTTGCT
TGCGCCACGCCTTTCCCGTGAGGATACGTCTGTGGGTGGGTATGACATACCTACGGGCACGCGTGTATTCGTTAATGTGT
GGGCCATTGCCCGTGACCCTACGCTATGGGACGCATCGGAGGAGTTCATGCCAGAGAGATTCTTGGGTAAGAAAATTGAT
GTGAAAGGGCAAGACTTTGAGCTATTACCATTTGGGTCTGGTCGACGGATGTGCCCAGGCTACAACCTTGGGCTTAAGGT
GATCCAATTGAGCATAGCCAATCTCCTTCATGGCTTCACGTGGAGGCTCCCGAAGGACATGGTAAAAGAGGATTTGAGCA
TGGAGGAGATATTCGGGTTATCCATGCCACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis