Browse Element(s) Details


Os.46776.1.S1_s_at

Description gb:AK111616.1
DB_XREF= gi:37988279
TID=Os.46776.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107D15, full insert sequence.
FL= gb:AK111616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2696011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26940Os.55146.1.S1_at11/119+16360335..16362288Cytochrome P450 family protein, expressed
LOC_Os09g26950OsAffx.6411.1.S1_at11/119+16375962..16376279cytochrome P450 monooxygenase CYP92A1, putative
LOC_Os09g26960Os.46776.1.S1_s_at11/119+16386751..16389390Cytochrome P450 family protein, expressed
LOC_Os09g26970OsAffx.24503.1.S1_x_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970Os.54855.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26970OsAffx.20809.1.S1_at1/119+16391869..16400321retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g26980OsAffx.17917.1.S1_at11/119+16402806..16407046Cytochrome P450 family protein, expressed
LOC_Os09g26989NANA9+16408710..16409553NA
LOC_Os09g27000OsAffx.6079.1.S1_at1/119+16413732..16417998expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46776.1.S1_s_at--609--951Chr09:16388788..16388812 (25 bp)
AGGACACGTCCGTCGACGGCTACGA
LOC_Os09g26960
Os.46776.1.S1_s_at--531--5171Chr09:16389118..16389142 (25 bp)
GCAAGTTCCCGCTTGAGGCTGTCGT
LOC_Os09g26960
Os.46776.1.S1_s_at--884--10771Chr09:16389130..16389154 (25 bp)
TTGAGGCTGTCGTCGAGCCCAAGCT
LOC_Os09g26960
Os.46776.1.S1_s_at--494--4311Chr09:16389192..16389216 (25 bp)
CCTTTGATGATGTGCGTGTGTACGT
LOC_Os09g26960
Os.46776.1.S1_s_at--948--7471Chr09:16389207..16389231 (25 bp)
GTGTGTACGTTCTGTGTCTCTTGAC
LOC_Os09g26960
Os.46776.1.S1_s_at--353--7451Chr09:16389220..16389244 (25 bp)
GTGTCTCTTGACTGTACTGTAGGCA
LOC_Os09g26960
Os.46776.1.S1_s_at--428--8751Chr09:16389232..16389256 (25 bp)
TGTACTGTAGGCACTGCTCCTGTCG
LOC_Os09g26960
Os.46776.1.S1_s_at--356--7211Chr09:16389253..16389277 (25 bp)
GTCGCGGTCCAACATTAAGCTTGCA
LOC_Os09g26960
Os.46776.1.S1_s_at--60--5031Chr09:16389275..16389299 (25 bp)
GCAGTGTATTGCTAGCGTTGTTACT
LOC_Os09g26960
Os.46776.1.S1_s_at--951--4631Chr09:16389289..16389313 (25 bp)
GCGTTGTTACTTATTATGCATCCTG
LOC_Os09g26960
Os.46776.1.S1_s_at--237--4271Chr09:16389310..16389334 (25 bp)
CCTGTGCTGCCTTTGTAGAGCTGAA
LOC_Os09g26960
Target Sequence 
AGGACACGTCCGTCGACGGCTACGACATCCCCGCCGGCACGCGGGTGCTCGTCAGCGTGTGGACCATCGGCCGCGACCCC
AAGCTGTGGGACGCGCCGGAGGAGTTCATGCCGGAGAGGTTCATCGGCAACAAGATCGACGTGAAGGGGCAGGACTTCGA
GCTGCTGCCGTTCGGGTCGGGCCGGCGGATGTGCCCCGGCTACAGCCTTGGGCTGAAGGTGATCCAGCTGAGCCTCGCCA
ATCTGCTGCACGGCTTCGCGTGGAGGCTGCCCGACGGCGTGACGAGGGAGCAGCTGAGCATGGAGGAGATCTTCGGCTTG
TCGACGCCGCGCAAGTTCCCGCTTGAGGCTGTCGTCGAGCCCAAGCTGCCCGCTCACCTCTATGCTGCTGCCTGATNTGA
TATGCCTTTGATGATGTGCGTGTGTACGTTCTGTGTCTCTTGACTGTACTGTAGGCACTGCTCCTGTCGCGGTCCAACAT
TAAGCTTGCAGTGTATTGCTAGCGTTGTTACTTATTATGCATCCTGTGCTGCCTTTGTAGAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46776.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis