Browse Element(s) Details


Os.49862.1.S1_at

Description gb:AK112086.1
DB_XREF= gi:37988749
TID=Os.49862.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D03, full insert sequence.
FL= gb:AK112086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1845011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18400OsAffx.30517.2.A1_at4/1112+10641530..10647056retrotransposon protein, putative, unclassified
LOC_Os12g18400OsAffx.448.1.S1_x_at1/1112+10641530..10647056retrotransposon protein, putative, unclassified
LOC_Os12g18410Os.9805.1.S1_at11/1112+10649374..10650768expressed protein
LOC_Os12g18420Os.46003.1.A1_x_at1/1112+10654737..10657484Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18420Os.46003.1.A1_at1/1112+10654737..10657484Transposable element protein, putative, Retrotrans_gag
LOC_Os12g18430NANA12+10658207..10659919hypothetical protein
LOC_Os12g18440NANA12+10662049..10662468hypothetical protein
LOC_Os12g18450Os.49862.1.S1_at11/1112+10666871..10669379expressed protein
LOC_Os12g18460NANA12+10672302..10679050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18470NANA12+10680137..10682408retrotransposon protein, putative, unclassified
LOC_Os12g18479NANA12+10685188..10686234hypothetical protein
LOC_Os12g18490OsAffx.19728.1.S1_at11/1112+10689322..10689681hypothetical protein
LOC_Os12g18500OsAffx.8585.1.S1_at1/1112+10692896..10694936retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49862.1.S1_at--8--10711Chr12:10668761..10668785 (25 bp)
TTGCGTGATGAGCTGCGGTTTCAAC
LOC_Os12g18450
Os.49862.1.S1_at--1133--10011Chr12:10668877..10668901 (25 bp)
TAGAATGCTGGCTCACATGGGCGCT
LOC_Os12g18450
Os.49862.1.S1_at--825--9231Chr12:10668917..10668941 (25 bp)
TCCATTCCTTCATCCTTTACAAGTA
LOC_Os12g18450
Os.49862.1.S1_at--657--8631Chr12:10669053..10669077 (25 bp)
TGGGAAATCGACAACATATCACTTT
LOC_Os12g18450
Os.49862.1.S1_at--417--251Chr12:10669068..10669092 (25 bp)
ATATCACTTTCATCTAGGCGAGCAT
LOC_Os12g18450
Os.49862.1.S1_at--860--891Chr12:10669083..10669107 (25 bp)
AGGCGAGCATCCGATGAGTCAGCAT
LOC_Os12g18450
Os.49862.1.S1_at--935--6091Chr12:10669098..10669122 (25 bp)
GAGTCAGCATCGATATTATCTTCAA
LOC_Os12g18450
Os.49862.1.S1_at--168--10051Chr12:10669157..10669181 (25 bp)
TAGATCAAAGTGCTCTTTCTGTTTG
LOC_Os12g18450
Os.49862.1.S1_at--11--5952Chr12:10669181..10669205 (25 bp)
GAGCACATTTTTCTTTCTACAATAA
LOC_Os12g18450
Os.49862.1.S1_at--318--7012Chr12:10669242..10669266 (25 bp)
GTACTGCTAGTGCTCATTTATGTGT
LOC_Os12g18450
Os.49862.1.S1_at--491--4951Chr12:10669270..10669294 (25 bp)
GCATTTTGCTCTACACTTTTCTTAT
LOC_Os12g18450
Target Sequence 
TTGCGTGATGAGCTGCGGTTTCAACGTGAAGAGCTAAATTCTCAGAAGAAAACTGTTGAGGAACAAAGTGTTGATATGGA
ATGTTTGATGGACCAGAAGCTGGAGGAAACAATGAATAGAATGCTGGCTCACATGGGCGCTGCTGGTGCTGCTTCTTCCA
TTCCTTCATCCTTTACAAGTACAACAACCAACTAGGATGTGGGAAATCGACAACATATCACTTTCATCTAGGCGAGCATC
CGATGAGTCAGCATCGATATTATCTTCAATTCTTCATTTAGATGTCATTTTGATTTATATATTTAGATCAAAGTGCTCTT
TCTGTTTGAGCACATTTTTCTTTCTACAATAAAGGGTATTTTTTTCAGAGTTATAAAGGGTAGTTGGAGTACTGCTAGTG
CTCATTTATGTGTACTGCATTTTGCTCTACACTTTTCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis