Browse Element(s) Details


OsAffx.19728.1.S1_at

Description tigr:9640.m01819
TID=OsAffx.19728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1849011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18450Os.49862.1.S1_at11/1112+10666871..10669379expressed protein
LOC_Os12g18460NANA12+10672302..10679050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g18470NANA12+10680137..10682408retrotransposon protein, putative, unclassified
LOC_Os12g18479NANA12+10685188..10686234hypothetical protein
LOC_Os12g18490OsAffx.19728.1.S1_at11/1112+10689322..10689681hypothetical protein
LOC_Os12g18500OsAffx.8585.1.S1_at1/1112+10692896..10694936retrotransposon, putative, centromere-specific
LOC_Os12g18510OsAffx.31798.1.S1_at11/1112+10698358..10701432hypothetical protein
LOC_Os12g18510OsAffx.4864.1.S1_at1/1112+10698358..10701432hypothetical protein
LOC_Os12g18520OsAffx.19729.1.S1_at11/1112+10707377..10707694hypothetical protein
LOC_Os12g18530Os.56361.1.S1_at11/1112+10709377..10715228Nucleotidyltransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19728.1.S1_at--245--9031Chr12:10689627..10689651 (25 bp)
TGCACAGGGACCAGTATCGTGACCC
LOC_Os12g18490
OsAffx.19728.1.S1_at--286--8091Chr12:10689620..10689644 (25 bp)
GGACCAGTATCGTGACCCGAGAGTG
LOC_Os12g18490
OsAffx.19728.1.S1_at--37--2671Chr12:10689542..10689566 (25 bp)
AAGCGCTCTCGGCAGCTGGAACATG
LOC_Os12g18490
OsAffx.19728.1.S1_at--505--4811Chr12:10689538..10689562 (25 bp)
GCTCTCGGCAGCTGGAACATGCCAG
LOC_Os12g18490
OsAffx.19728.1.S1_at--523--1791Chr12:10689495..10689519 (25 bp)
ACCCAACAATCTCAGGGCTCGTCGA
LOC_Os12g18490
OsAffx.19728.1.S1_at--698--3051Chr12:10689488..10689512 (25 bp)
AATCTCAGGGCTCGTCGAGCACAGG
LOC_Os12g18490
OsAffx.19728.1.S1_at--1095--3771Chr12:10689394..10689502 (25 bp)
CTCGTCGAGCACAGGATGTAGGCGT
LOC_Os12g18490
OsAffx.19728.1.S1_at--104--5951Chr12:10689388..10689496 (25 bp)
GAGCACAGGATGTAGGCGTATGTAC
LOC_Os12g18490
OsAffx.19728.1.S1_at--146--8371Chr12:10689374..10689398 (25 bp)
GGCGTATGTACGATTGCGAAGACAA
LOC_Os12g18490
OsAffx.19728.1.S1_at--1152--6951Chr12:10689367..10689391 (25 bp)
GTACGATTGCGAAGACAAGGGAGTT
LOC_Os12g18490
OsAffx.19728.1.S1_at--27--2231Chr12:10689353..10689377 (25 bp)
ACAAGGGAGTTGGAGACAGTGATCT
LOC_Os12g18490
Target Sequence 
TGCACAGGGACCAGTATCGTGACCCGAGAGTGGGCGCAGCCACCACCGCTTCTGCTCGCCCCACAGAGCGTCCCGGCCGT
CACCCAAGCGCTCTCGGCAGCTGGAACATGCCAGCAAGGGGCCATCACCCTCACCCAACAATCTCAGGGCTCGTCGAGCA
CAGGATGTAGGCGTATGTACGATTGCGAAGACAAGGGAGTTGGAGACAGTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis