Browse Element(s) Details


Os.56361.1.S1_at

Description gb:AK109925.1
DB_XREF= gi:32995134
TID=Os.56361.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-E12, full insert sequence.
FL= gb:AK109925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1853011/11Nucleotidyltransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18479NANA12+10685188..10686234hypothetical protein
LOC_Os12g18490OsAffx.19728.1.S1_at11/1112+10689322..10689681hypothetical protein
LOC_Os12g18500OsAffx.8585.1.S1_at1/1112+10692896..10694936retrotransposon, putative, centromere-specific
LOC_Os12g18510OsAffx.31798.1.S1_at11/1112+10698358..10701432hypothetical protein
LOC_Os12g18510OsAffx.4864.1.S1_at1/1112+10698358..10701432hypothetical protein
LOC_Os12g18520OsAffx.19729.1.S1_at11/1112+10707377..10707694hypothetical protein
LOC_Os12g18530Os.56361.1.S1_at11/1112+10709377..10715228Nucleotidyltransferase domain containing protein, expressed
LOC_Os12g18540Os.20602.2.S1_x_at10/1112+10716503..10718683hAT family dimerisation domain containing protein
LOC_Os12g18550OsAffx.7632.1.S1_at11/1112+10722045..10722382hypothetical protein
LOC_Os12g18560Os.57041.1.S1_at11/1112+10729706..10730828pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g18570OsAffx.19730.1.S1_at11/1112+10735227..10735637hypothetical protein
LOC_Os12g18590OsAffx.31799.1.S1_at11/1112+10737739..10740929hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56361.1.S1_at--907--5231Chr12:10710036..10710060 (25 bp)
GAATCTTTCAGACCTATCCCATTTA
LOC_Os12g18530
Os.56361.1.S1_at--373--2831Chr12:10709997..10710021 (25 bp)
AAGTTCGGAGAAGCATTCCCTCTGC
LOC_Os12g18530
Os.56361.1.S1_at--1081--1371Chr12:10709798..10709822 (25 bp)
AGACCAGATGGACTCTACCAGCTGA
LOC_Os12g18530
Os.56361.1.S1_at--298--1991Chr12:10709751..10709775 (25 bp)
ACTCCAGACTCGTTCTTGCTGAGAC
LOC_Os12g18530
Os.56361.1.S1_at--673--8971Chr12:10709640..10709664 (25 bp)
TGAAGTTTGGATGTTACCGCCCTCA
LOC_Os12g18530
Os.56361.1.S1_at--391--10471Chr12:10709627..10709651 (25 bp)
TTACCGCCCTCAGTTTGGAGTACTT
LOC_Os12g18530
Os.56361.1.S1_at--559--8031Chr12:10709611..10709635 (25 bp)
GGAGTACTTCTTTAGGTGTGTTCAC
LOC_Os12g18530
Os.56361.1.S1_at--223--6751Chr12:10709592..10709616 (25 bp)
GTTCACTCCCGGTAGAATCTTTAGT
LOC_Os12g18530
Os.56361.1.S1_at--777--6751Chr12:10709555..10709579 (25 bp)
GTTCACCTGCAGCTTATATAACCCA
LOC_Os12g18530
Os.56361.1.S1_at--762--2471Chr12:10709434..10709458 (25 bp)
AACACCCTTTTGCTGTGCTTTATGT
LOC_Os12g18530
Os.56361.1.S1_at--1078--10111Chr12:10709414..10709438 (25 bp)
TATGTTGATGCACCCTTTGCAGTTT
LOC_Os12g18530
Target Sequence 
GAATCTTTCAGACCTATCCCATTTAGTTCCCCCTGTGCAAAGTTCGGAGAAGCATTCCCTCTGCCTACTAGCAAGGGGCC
TGCTGAAACCGAAAGCAGACCAGATGGACTCTACCAGCTGAGAGATGAAGCTGACTTCCCTCCACTCCAGACTCGTTCTT
GCTGAGACTTGCAATGGATTTAATCCTAGAGTTGGAAGATAGAGGAAGCTTACTGGCTGAGAAATAGGTGCTTCAGGAGG
AACCTGATATCATATGAAGTTTGGATGTTACCGCCCTCAGTTTGGAGTACTTCTTTAGGTGTGTTCACTCCCGGTAGAAT
CTTTAGTAAAAAAGAACTAGTTCACCTGCAGCTTATATAACCCAAAAAAAGGAAAGAAAAACAAAAATGCTAAATAAAAA
GAGGATTCCATGGACCCTATCAAATTTTAATAGAAGACAAAAGAAGCAGTGTATAGGTGCAACACCCTTTTGCTGTGCTT
TATGTTGATGCACCCTTTGCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis