Browse Element(s) Details


OsAffx.31799.1.S1_at

Description tigr:9640.m01828
TID=OsAffx.31799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1859011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18530Os.56361.1.S1_at11/1112+10709377..10715228Nucleotidyltransferase domain containing protein, expressed
LOC_Os12g18540Os.20602.2.S1_x_at10/1112+10716503..10718683hAT family dimerisation domain containing protein
LOC_Os12g18550OsAffx.7632.1.S1_at11/1112+10722045..10722382hypothetical protein
LOC_Os12g18560Os.57041.1.S1_at11/1112+10729706..10730828pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g18570OsAffx.19730.1.S1_at11/1112+10735227..10735637hypothetical protein
LOC_Os12g18590OsAffx.31799.1.S1_at11/1112+10737739..10740929hypothetical protein
LOC_Os12g18600OsAffx.19542.3.S1_x_at7/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18600OsAffx.21754.1.S1_x_at1/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18610NANA12+10748546..10749208retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18620NANA12+10751824..10752060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18630Os.21468.1.S1_at11/1112+10754001..10760219expressed protein
LOC_Os12g18640Os.8399.1.S1_at11/1112+10763904..10766326pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31799.1.S1_at--526--10371Chr12:10738996..10739020 (25 bp)
TTTTGCTCGACAAGTTTCCCAACAG
LOC_Os12g18590
OsAffx.31799.1.S1_at--58--5311Chr12:10738948..10738972 (25 bp)
GAAGGACATTCCTCTATGTCGCAGT
LOC_Os12g18590
OsAffx.31799.1.S1_at--461--10251Chr12:10738903..10738927 (25 bp)
TTGTTAGGTTCGCTTGCCGGACTAC
LOC_Os12g18590
OsAffx.31799.1.S1_at--267--4471Chr12:10738888..10738912 (25 bp)
GCCGGACTACGTCGTTACAGTGGAT
LOC_Os12g18590
OsAffx.31799.1.S1_at--383--10252Chr12:10738792..10738816 (25 bp)
TTTGTGCTCTTTTAGGGAATCCTCA
LOC_Os12g18590
OsAffx.31799.1.S1_at--364--331Chr12:10738735..10738759 (25 bp)
ATACTCCTCTCGATTTGTCCAGAAG
LOC_Os12g18590
OsAffx.31799.1.S1_at--1042--311Chr12:10738566..10738711 (25 bp)
ATACGGCGAACACTGAGGAGCTCAT
LOC_Os12g18590
OsAffx.31799.1.S1_at--283--6611Chr12:10738522..10738546 (25 bp)
GTTGGCTCTGAACACTATCACGATC
LOC_Os12g18590
OsAffx.31799.1.S1_at--2--3071Chr12:10738478..10738502 (25 bp)
AATCTATAGCCGTCGTGTGGTATCA
LOC_Os12g18590
OsAffx.31799.1.S1_at--586--2451Chr12:10738406..10738430 (25 bp)
AACACTAGGCATTGGTTCGGTTCTA
LOC_Os12g18590
OsAffx.31799.1.S1_at--161--7351Chr12:10738362..10738386 (25 bp)
GTGCAATGTTTGCTCTTCCTGGAGG
LOC_Os12g18590
Target Sequence 
TTTTGCTCGACAAGTTTCCCAACAGCGCGGGTTTGCGTGATGCCAAGGGAAGGACATTCCTCTATGTCGCAGTTGAGAAA
CAGAGTTTAGCTGTTGTTAGGTTCGCTTGCCGGACTACGTCGTTACAGTGGATTTTGAACATGCAAGACAAGGATGGCAA
CACTGCACTGCACCTTGCTATCCAGGCCAATCACCATCGATTGTTTTGTGCTCTTTTAGGGAATCCTCAAGTCAATTTAG
ATTTAACAAATCATAGTGGGCATACTCCTCTCGATTTGTCCAGAAGGATGCTTCCCAGAGGGATGAAATATACGGCGAAC
ACTGAGGAGCTCATATATTTGACACTCAAACAAGTTGGCTCTGAACACTATCACGATCGCCGGGATCACATCGAAGAAAT
CTATAGCCGTCGTGTGGTATCAAAAGAGGATCTGGCCGAAGAATTAGACAAGATGCAAGAATCGACACAAACACTAGGCA
TTGGTTCGGTTCTAATTGTGACTGTGACGTTTGGTGCAATGTTTGCTCTTCCTGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis