Browse Element(s) Details


Os.8399.1.S1_at

Description gb:AK106931.1
DB_XREF= gi:32992140
TID=Os.8399.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C03, full insert sequence.
FL= gb:AK106931.1 gb:AK099847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1864011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18590OsAffx.31799.1.S1_at11/1112+10737739..10740929hypothetical protein
LOC_Os12g18600OsAffx.19542.3.S1_x_at7/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18600OsAffx.21754.1.S1_x_at1/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18610NANA12+10748546..10749208retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18620NANA12+10751824..10752060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18630Os.21468.1.S1_at11/1112+10754001..10760219expressed protein
LOC_Os12g18640Os.8399.1.S1_at11/1112+10763904..10766326pentatricopeptide, putative, expressed
LOC_Os12g18650Os.11875.1.S1_a_at11/1112+10768344..10772796regulator of chromosome condensation, putative, expressed
LOC_Os12g18660OsAffx.19731.1.S1_at9/1112+10781674..10783543hypothetical protein
LOC_Os12g18670OsAffx.19732.1.S1_at11/1112+10787964..10788434hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8399.1.S1_at--136--2391Chr12:10765733..10765757 (25 bp)
AAACAATAAGGGTGGCTCTGCTTTT
LOC_Os12g18640
Os.8399.1.S1_at--69--8331Chr12:10765746..10765770 (25 bp)
GGCTCTGCTTTTGAATGGTTCCATA
LOC_Os12g18640
Os.8399.1.S1_at--1131--6151Chr12:10765839..10765863 (25 bp)
GATGGTAAACCCAGGCTTGCCTATG
LOC_Os12g18640
Os.8399.1.S1_at--458--8891Chr12:10765878..10765897 (20 bp)
TGAGGGCTTGCAACCAAGGGCTTGA
LOC_Os12g18640
Os.8399.1.S1_at--153--4991Chr12:10765932..10765956 (25 bp)
GCATGCCAAGATTATGGTTCCCTCA
LOC_Os12g18640
Os.8399.1.S1_at--743--6311Chr12:10765959..10765983 (25 bp)
GATCTAAATTCTTTGGGTCCTCGGC
LOC_Os12g18640
Os.8399.1.S1_at--670--8631Chr12:10765972..10765996 (25 bp)
TGGGTCCTCGGCCTGTTAAGAAAGT
LOC_Os12g18640
Os.8399.1.S1_at--998--7951Chr12:10766045..10766069 (25 bp)
GGATCTTCCCAGCAGCACAAAACAT
LOC_Os12g18640
Os.8399.1.S1_at--307--2511Chr12:10766065..10766089 (25 bp)
AACATTTTGGTAGCACTGGAACATC
LOC_Os12g18640
Os.8399.1.S1_at--775--7731Chr12:10766116..10766140 (25 bp)
GGTGGATCATGTAGCATTCGGCCCC
LOC_Os12g18640
Os.8399.1.S1_at--473--8971Chr12:10766151..10766175 (25 bp)
TGAACACTTCAAACTCACTCCAAGT
LOC_Os12g18640
Target Sequence 
AAACAATAAGGGTGGCTCTGCTTTTGAATGGTTCCATAGGATGAAAGTGCAGAACATTGAGCCAAATGAAATTACATATC
AGATGTTGATTGAAGCTCTTGTACAAGATGGTAAACCCAGGCTTGCCTATGAGATGTACATGAGGGCTTGCAACCAAGGG
CTTGAGCTTCCTGCAAAATCATANGACACTGTAATGGAGGCATGCCAAGATTATGGTTCCCTCATAGATCTAAATTCTTT
GGGTCCTCGGCCTGTTAAGAAAGTGGAACCCATCAGGATAGAGAACAAGTTTTCNAGTAGTTATTATGTTGGGGATCTTC
CCAGCAGCACAAAACATTTTGGTAGCACTGGAACATCTANTTTATATAGATACAGAACGGAAAGGTGGATCATGTAGCAT
TCGGCCCCCTCTTTTTTCTGAACACTTCAAACTCACTCCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis