Browse Element(s) Details


OsAffx.19731.1.S1_at

Description tigr:9640.m01839
TID=OsAffx.19731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g186609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18630Os.21468.1.S1_at11/1112+10754001..10760219expressed protein
LOC_Os12g18640Os.8399.1.S1_at11/1112+10763904..10766326pentatricopeptide, putative, expressed
LOC_Os12g18650Os.11875.1.S1_a_at11/1112+10768344..10772796regulator of chromosome condensation, putative, expressed
LOC_Os12g18660OsAffx.19731.1.S1_at9/1112+10781674..10783543hypothetical protein
LOC_Os12g18670OsAffx.19732.1.S1_at11/1112+10787964..10788434hypothetical protein
LOC_Os12g18680NANA12+10791341..10791640hypothetical protein
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein
LOC_Os12g18700OsAffx.19734.1.S1_at9/1112+10804491..10806388expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19731.1.S1_at--165--7311Chr12:10781423..10781447 (25 bp)
GTGCTTGCCGCCAGTTAAGTCCTTC
NONE
OsAffx.19731.1.S1_at--668--9211NONE
TCCACGGGCCGCAGGTGAACAGAAT
NONE
OsAffx.19731.1.S1_at--761--7231Chr12:10783267..10783291 (25 bp)
GTCCGGTGGACAGAGCCGTGCTCAT
LOC_Os12g18660
OsAffx.19731.1.S1_at--1150--531Chr12:10783290..10783314 (25 bp)
ATCGCCTTGGGCACATCGATGGGAA
LOC_Os12g18660
OsAffx.19731.1.S1_at--806--5451Chr12:10783312..10783336 (25 bp)
GAACTGGCCAGAGGTGAAGCTGATC
LOC_Os12g18660
OsAffx.19731.1.S1_at--575--5411Chr12:10783327..10783351 (25 bp)
GAAGCTGATCAACGACTACGCGATG
LOC_Os12g18660
OsAffx.19731.1.S1_at--475--9691Chr12:10783367..10783391 (25 bp)
TCAATGGCTGTCACCGGGACGGGCT
LOC_Os12g18660
OsAffx.19731.1.S1_at--838--7731Chr12:10783427..10783451 (25 bp)
GGTGGATTCGTTTCCACGCTATCAA
LOC_Os12g18660
OsAffx.19731.1.S1_at--888--4351Chr12:10783440..10783464 (25 bp)
CCACGCTATCAACGAAGGACTTCTG
LOC_Os12g18660
OsAffx.19731.1.S1_at--936--1771Chr12:10783472..10783496 (25 bp)
ACGGTCATTACGCTCGTTCAAACGA
LOC_Os12g18660
OsAffx.19731.1.S1_at--962--6751Chr12:10783487..10783511 (25 bp)
GTTCAAACGAGGTCAGCTCGTCATC
LOC_Os12g18660
Target Sequence 
GTGCTTGCCGCCAGTTAAGTCCTTCTCTCGCCTTGGCCGCTCATCCGCGCCTCCTCCACGGGCCGCAGGTGAACAGAATG
TCCGGTGGACAGAGCCGTGCTCATCGCCTTGGGCACATCGATGGGAACTGGCCAGAGGTGAAGCTGATCAACGACTACGC
GATGTTCATGGGGTACCTGTCAATGGCTGTCACCGGGACGGGCTTCCTGGTGCTCACTTGGTCCACCGTCGTCCTCCTCG
GTGGATTCGTTTCCACGCTATCAACGAAGGACTTCTGGAGTCTCACGGTCATTACGCTCGTTCAAACGAGGTCAGCTCGT
CATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis