Browse Element(s) Details


OsAffx.19734.1.S1_at

Description tigr:9640.m01843
TID=OsAffx.19734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g187009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18660OsAffx.19731.1.S1_at9/1112+10781674..10783543hypothetical protein
LOC_Os12g18670OsAffx.19732.1.S1_at11/1112+10787964..10788434hypothetical protein
LOC_Os12g18680NANA12+10791341..10791640hypothetical protein
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein
LOC_Os12g18700OsAffx.19734.1.S1_at9/1112+10804491..10806388expressed protein
LOC_Os12g18710OsAffx.7633.1.S1_at10/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.25317.1.S1_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.20972.1.S1_x_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19734.1.S1_at--298--1931Chr12:10806318..10806340 (23 bp)
ACGGTCACTGGCATGCGCCTCAGAG
LOC_Os12g18700
OsAffx.19734.1.S1_at--69--8511NONE
TGGCATGCGCCTCAGAGCATCAAGG
NONE
OsAffx.19734.1.S1_at--765--9151NONE
TGCGCCTCAGAGCATCAAGGGTCGT
NONE
OsAffx.19734.1.S1_at--787--4451Chr12:10804868..10804888 (21 bp)
GCCTCAGAGCATCAAGGGTCGTTGT
LOC_Os12g18700
OsAffx.19734.1.S1_at--993--9631Chr12:10804865..10804888 (24 bp)
TCAGAGCATCAAGGGTCGTTGTGGT
LOC_Os12g18700
OsAffx.19734.1.S1_at--745--9391Chr12:10804850..10804874 (25 bp)
TCGTTGTGGTCGTGGCGGGTAAAGT
LOC_Os12g18700
OsAffx.19734.1.S1_at--358--3971Chr12:10804835..10804859 (25 bp)
CGGGTAAAGTTGGAGGTGCTGTACT
LOC_Os12g18700
OsAffx.19734.1.S1_at--918--4111Chr12:10804801..10804825 (25 bp)
CGCGGTGGAGGACAACGTCGGAGCT
LOC_Os12g18700
OsAffx.19734.1.S1_at--788--7071Chr12:10804706..10804730 (25 bp)
GTCGGAACCGGACACGGCGGCTCTG
LOC_Os12g18700
OsAffx.19734.1.S1_at--4--6311Chr12:10804557..10804581 (25 bp)
GATGAAGTCTTCACCCGTGGAGCGA
LOC_Os12g18700
OsAffx.19734.1.S1_at--970--651Chr12:10804556..10804580 (25 bp)
ATGAAGTCTTCACCCGTGGAGCGAT
LOC_Os12g18700
Target Sequence 
ACGGTCACTGGCATGCGCCTCAGAGCATCAAGGGTCGTTGTGGTCGTGGCGGGTAAAGTTGGAGGTGCTGTACTGGGAGA
AGCCGCGGTGGAGGACAACGTCGGAGCTGGTGGCGACGGAAAGTCCGCTCCGGCCGCGGCGGCGGACCTCGGCAGCGGCG
GCGGCGGATGGGGCCGAGGTCGGAACCGGACACGGCGGCTCTGGCGGCGGGGAAGAAGCAGCGGCTCCGGCGGCGGGGAT
GCAGCGGCAGTCCACGCGGGGAAGAAGCACCGGCTCCGGCGGCGGCGAAGAATCAGAGGCTCCGGCGGCGGCAGTCCACG
CGGGGAGGATGAAGTCTTCACCCGTGGAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis