Browse Element(s) Details


OsAffx.20972.1.S1_x_at

Description gb:XM_354138.1
DB_XREF= gi:35189709
TID=OsAffx.20972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g187101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18670OsAffx.19732.1.S1_at11/1112+10787964..10788434hypothetical protein
LOC_Os12g18680NANA12+10791341..10791640hypothetical protein
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein
LOC_Os12g18700OsAffx.19734.1.S1_at9/1112+10804491..10806388expressed protein
LOC_Os12g18710OsAffx.7633.1.S1_at10/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.25317.1.S1_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.20972.1.S1_x_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein
LOC_Os12g18750OsAffx.2602.1.S1_at11/1112+10838903..10840765hypothetical protein
LOC_Os12g18750Os.5300.1.S1_at1/1112+10838903..10840765hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20972.1.S1_x_at--37--2311Chr07:6491554..6491578 (25 bp)
AAATGGCCCGCAACGGCCATCAGCA
NONE
OsAffx.20972.1.S1_x_at--745--8432Chr07:6491568..6491592 (25 bp)
GGCCATCAGCAAGCAATCCTGGACA
NONE
OsAffx.20972.1.S1_x_at--1015--574Chr12:10813305..10813348 (25 bp)
ATCCACGTGTAAGGCCAGGCTGAAC
LOC_Os12g18710
OsAffx.20972.1.S1_x_at--575--3491Chr07:6491607..6491631 (25 bp)
CAGGCTGAACCGACATTGCCAGGGT
NONE
OsAffx.20972.1.S1_x_at--366--8311Chr07:6491609..6491633 (25 bp)
GGCTGAACCGACATTGCCAGGGTTT
NONE
OsAffx.20972.1.S1_x_at--465--8971Chr07:6491612..6491636 (25 bp)
TGAACCGACATTGCCAGGGTTTGGC
NONE
OsAffx.20972.1.S1_x_at--163--1791Chr07:6491615..6491639 (25 bp)
ACCGACATTGCCAGGGTTTGGCTGA
NONE
OsAffx.20972.1.S1_x_at--928--5671Chr07:6491618..6491642 (25 bp)
GACATTGCCAGGGTTTGGCTGAACC
NONE
OsAffx.20972.1.S1_x_at--151--71Chr07:6491621..6491645 (25 bp)
ATTGCCAGGGTTTGGCTGAACCCCT
NONE
OsAffx.20972.1.S1_x_at--86--8473Chr12:10044137..10044162 (23 bp)
TGGCTGAACCCCTGGTTCAGCCGAA
NONE
OsAffx.20972.1.S1_x_at--444--7891Chr07:6491646..6491670 (25 bp)
GGTTCAGCCGAACCTGAGCGGCCCA
NONE
Target Sequence 
AAATGGCCCGCAACGGCCATCAGCAAGCAATCCTGGACATCCACGTGTAAGGCCAGGCTGAACCGACATTGCCAGGGTTT
GGCTGAACCCCTGGTTCAGCCGAACCTGAGCGGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20972.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis