Browse Element(s) Details


Os.22682.1.S1_a_at

Description gb:AK103843.1
DB_XREF= gi:32989052
TID=Os.22682.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.22682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148J12, full insert sequence.
FL= gb:AK072022.1 gb:AK103843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1872911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein
LOC_Os12g18700OsAffx.19734.1.S1_at9/1112+10804491..10806388expressed protein
LOC_Os12g18710OsAffx.7633.1.S1_at10/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.25317.1.S1_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.20972.1.S1_x_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein
LOC_Os12g18750OsAffx.2602.1.S1_at11/1112+10838903..10840765hypothetical protein
LOC_Os12g18750Os.5300.1.S1_at1/1112+10838903..10840765hypothetical protein
LOC_Os12g18760Os.7839.1.S1_at11/1112+10845644..10853690expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22682.1.S1_a_at--177--6371Chr12:10830056..10830080 (25 bp)
GATCCTCAATCATCTGTGTAGTCCC
LOC_Os12g18729
Os.22682.1.S1_a_at--741--9731Chr12:10830061..10830085 (25 bp)
TCAATCATCTGTGTAGTCCCTACTC
LOC_Os12g18729
Os.22682.1.S1_a_at--496--3891Chr12:10830069..10830093 (25 bp)
CTGTGTAGTCCCTACTCCACTGACG
LOC_Os12g18729
Os.22682.1.S1_a_at--1058--1971Chr12:10830503..10830527 (25 bp)
ACTGCGAGTGGCAGTTTCAGGCCTT
LOC_Os12g18729
Os.22682.1.S1_a_at--132--4731Chr12:10830648..10830672 (25 bp)
GCTGGTATCTGCGACCAGACAACGA
LOC_Os12g18729
Os.22682.1.S1_a_at--467--451Chr12:10830654..10830678 (25 bp)
ATCTGCGACCAGACAACGAAGCCTC
LOC_Os12g18729
Os.22682.1.S1_a_at--296--4611Chr12:10830658..10830682 (25 bp)
GCGACCAGACAACGAAGCCTCGCAT
LOC_Os12g18729
Os.22682.1.S1_a_at--15--9211Chr12:10830761..10830785 (25 bp)
TGCCAGGCCGGAACTGTACGAGTTT
LOC_Os12g18729
Os.22682.1.S1_a_at--110--2571Chr12:10830772..10830796 (25 bp)
AACTGTACGAGTTTGTGACTGCGAA
LOC_Os12g18729
Os.22682.1.S1_a_at--316--10251Chr12:10830783..10830807 (25 bp)
TTTGTGACTGCGAAATACACCCCGC
LOC_Os12g18729
Os.22682.1.S1_a_at--455--6471Chr12:10830859..10830883 (25 bp)
GATAACACCCTAATTTGTACTTTCT
LOC_Os12g18729
Target Sequence 
GATCCTCAATCATCTGTGTAGTCCCTACTCCACTGACGAGGAACATCTTCAGAATCTGAAGGAGGCCATCATTGATTTGA
TACCCAAGGTGCTAAGAGAAGCACTTGGTTGGGGGTTGACAGGAGAAGAGATACTGCGAGTGGCAGTTTCAGGCCTTGAA
GGTACCCAAGATGATGACTGGAAATTGCAGGAAGCATTGGCGTCCCTCTGTGCAACCGTGTTTAACAGAATTGTCAGCAA
GGATGCAGATTTGACTGCTCGGTTCAACAACATCGCCGCTGGTATCTGCGACCAGACAACGAAGCCTCGCATGACCTTCG
CAGACCTCATCAATGAAGCTGTAAAAGTTCATCGCATCGAATTTAAAAAACCAGAAAAACCAAAACCAGCTGCCAGGCCG
GAACTGTACGAGTTTGTGACTGCGAAATACACCCCGCCCCACTTTATGTTTTTGGGCGAGGAAGATCCCAACGCGTGTTG
TATCTCTTGATAACACCCTAATTTGTACTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22682.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis