Browse Element(s) Details


OsAffx.19733.1.S1_at

Description tigr:9640.m01842
TID=OsAffx.19733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1869011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18650Os.11875.1.S1_a_at11/1112+10768344..10772796regulator of chromosome condensation, putative, expressed
LOC_Os12g18660OsAffx.19731.1.S1_at9/1112+10781674..10783543hypothetical protein
LOC_Os12g18670OsAffx.19732.1.S1_at11/1112+10787964..10788434hypothetical protein
LOC_Os12g18680NANA12+10791341..10791640hypothetical protein
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein
LOC_Os12g18700OsAffx.19734.1.S1_at9/1112+10804491..10806388expressed protein
LOC_Os12g18710OsAffx.7633.1.S1_at10/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.25317.1.S1_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.20972.1.S1_x_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19733.1.S1_at--610--5411Chr12:10798798..10798822 (25 bp)
GAAGCTGTGCCACCATCATATTGGA
LOC_Os12g18690
OsAffx.19733.1.S1_at--916--911Chr12:10798868..10798892 (25 bp)
AGGCTTGTACAACAGCATCCACAGG
LOC_Os12g18690
OsAffx.19733.1.S1_at--23--5051Chr12:10798902..10798926 (25 bp)
GCAGATGTCCTGAAACACCTATATG
LOC_Os12g18690
OsAffx.19733.1.S1_at--692--6571Chr12:10798976..10798997 (22 bp)
GATTGATTTGTTGCCCAAGGTACTA
LOC_Os12g18690
OsAffx.19733.1.S1_at--471--10731Chr12:10799296..10799320 (25 bp)
TTGCAGCTACCCAAGACAATGACGG
LOC_Os12g18690
OsAffx.19733.1.S1_at--710--5391Chr12:10799331..10799355 (25 bp)
GAAGCATTGGCATCCCTTTGTGCGA
LOC_Os12g18690
OsAffx.19733.1.S1_at--187--551Chr12:10799342..10799366 (25 bp)
ATCCCTTTGTGCGACCGTGTATAAT
LOC_Os12g18690
OsAffx.19733.1.S1_at--1125--1291Chr12:10799381..10799405 (25 bp)
AGATGCAGATTTGGCCGATCGGTTT
LOC_Os12g18690
OsAffx.19733.1.S1_at--258--7871Chr12:10799401..10799425 (25 bp)
GGTTTGAAGACATTACGGCCCGTAT
LOC_Os12g18690
OsAffx.19733.1.S1_at--455--8091Chr12:10799441..10799465 (25 bp)
GGAGCCTCTCAAGACCTTCAGTGAC
LOC_Os12g18690
OsAffx.19733.1.S1_at--983--10131Chr12:10799502..10799526 (25 bp)
TATCCGCCGGAGAACGCTATGCGTT
LOC_Os12g18690
Target Sequence 
GAAGCTGTGCCACCATCATATTGGAGAAATATGGTCCTAATATGATTGATTGTATCGGTAAAACTGATTCAGGCTTGTAC
AACAGCATCCACAGGAAAATTGCAGCAGATGTCCTGAAACACCTATATGGTAACTATTCCATCGATGATGAACATTTTCA
GAATCTGAAGGAGGCCATGATTGATTTGTTGCCCAAGGTACTAAGAGAAGTACTTGGTTGGGGATTGACAGAAACACATA
TACAAAGAGTGCCAAGTTATACTGCACCGGCAGGTTCAGGCCTTGCAGCTACCCAAGACAATGACGGGAGATTGCAGGAA
GCATTGGCATCCCTTTGTGCGACCGTGTATAATAGAATGGTCAACACAGATGCAGATTTGGCCGATCGGTTTGAAGACAT
TACGGCCCGTATGTGCGACCTGGCAGCGGAGCCTCTCAAGACCTTCAGTGACCTCATCCAAGAAGCAATGCAGAGGCAGC
CGCCGTACTATCCGCCGGAGAACGCTATGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis