Browse Element(s) Details


Os.4987.1.S1_at

Description gb:AY382617.1
DB_XREF= gi:37030051
GEN=APx3
TID=Os.4987.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4987 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative peroxisome-bound ascorbate peroxidase (APx3) mRNA, complete cds.
PROD=putative peroxisome-bound ascorbate peroxidase
FL= gb:AY382617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1468011/11L-ascorbate peroxidase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14654Os.52443.1.S1_at11/114+8196368..8213126Vacuolar protein-sorting protein 33 homolog, putative, expressed
LOC_Os04g14670Os.46012.2.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.46012.3.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.27088.1.A1_x_at2/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.54691.1.S1_x_at1/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14680Os.4987.1.S1_at11/114+8219095..8221710L-ascorbate peroxidase 3, putative, expressed
LOC_Os04g14690Os.55278.1.S1_at11/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14690Os.50352.1.S1_at10/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14700NANA4+8232202..8235347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14710Os.50352.1.S1_at2/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14710OsAffx.9287.1.S1_at1/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0005737cellular_componentcytoplasm
GO:0005778cellular_componentperoxisomal membrane
GO:0005829cellular_componentcytosol
GO:0004601molecular_functionperoxidase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4987.1.S1_at--161--2351Chr04:8220091..8220115 (25 bp)
AAAGCTCGTCCCGAAAGATCAGGAT
LOC_Os04g14680
Os.4987.1.S1_at--420--7791Chr04:8220061..8220085 (25 bp)
GGTGCCTGGACAAAGGATCCACTGA
LOC_Os04g14680
Os.4987.1.S1_at--1061--5611Chr04:8219874..8220055 (25 bp)
GACAACTCCTATTTCATTGAGCTTC
LOC_Os04g14680
Os.4987.1.S1_at--1033--1071Chr04:8219833..8219857 (25 bp)
AGGGCTTCTGAAGTTGCCTACTGAC
LOC_Os04g14680
Os.4987.1.S1_at--505--10791Chr04:8219801..8219825 (25 bp)
TTGTTGAAGATCCTACATTCCGCCG
LOC_Os04g14680
Os.4987.1.S1_at--232--91Chr04:8219785..8219809 (25 bp)
ATTCCGCCGCTATGTCGAACTATAT
LOC_Os04g14680
Os.4987.1.S1_at--315--6111Chr04:8219424..8219448 (25 bp)
GAGTCGCACAAGAAGCTATCTGAGC
LOC_Os04g14680
Os.4987.1.S1_at--343--4411Chr04:8219357..8219381 (25 bp)
GCCAGAAACCAAAGTCCCTGTTGAT
LOC_Os04g14680
Os.4987.1.S1_at--989--7571Chr04:8219288..8219312 (25 bp)
GGGCTTACCTCTGTGAATCCAACAA
LOC_Os04g14680
Os.4987.1.S1_at--501--6451Chr04:8219237..8219261 (25 bp)
GATCACAATGATCGTTATTTCGTCT
LOC_Os04g14680
Os.4987.1.S1_at--595--10191Chr04:8219222..8219246 (25 bp)
TATTTCGTCTCAACCACTAATGGCT
LOC_Os04g14680
Target Sequence 
AAAGCTCGTCCCGAAAGATCAGGATTTGATGGTGCCTGGACAAAGGATCCACTGAAATTTGACAACTCCTATTTCATTGA
GCTTCTGAAAGAGAATTCAGAAGGGCTTCTGAAGTTGCCTACTGACAAGGCTCTTGTTGAAGATCCTACATTCCGCCGCT
ATGTCGAACTATATGCCAAGGACGAAGATGCATTTTTCAGGGACTATGCAGAGTCGCACAAGAAGCTATCTGAGCTGGGG
TTCACGCCTCCTCGCTCTGCATTNATCTACAAATCATGCCAGAAACCAAAGTCCCTGTTGATGCAAACTGCAGCTGGGGT
TGCAGTTGCTGCTGCAGTTGTCGCNTGGGCTTACCTCTGTGAATCCAACAAGAGGCTTGGCTAATTTAATTTGCATCGAT
CACAATGATCGTTATTTCGTCTCAACCACTAATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis