Browse Element(s) Details


OsAffx.9287.1.S1_at

Description gb:NM_192077.1
DB_XREF= gi:34911237
GEN=P0445E10.17
TID=OsAffx.9287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445E10.17 (P0445E10.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g147101/11Flavin-binding monooxygenase-like family protein, expressed
LOC_Os11g272641/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14670Os.46012.2.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.46012.3.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.27088.1.A1_x_at2/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.54691.1.S1_x_at1/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14680Os.4987.1.S1_at11/114+8219095..8221710L-ascorbate peroxidase 3, putative, expressed
LOC_Os04g14690Os.55278.1.S1_at11/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14690Os.50352.1.S1_at10/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14700NANA4+8232202..8235347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14710Os.50352.1.S1_at2/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14710OsAffx.9287.1.S1_at1/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14719NANA4+8250391..8251356NA
LOC_Os04g14730NANA4+8254569..8255024expressed protein
LOC_Os04g14740OsAffx.13820.2.S1_at8/114+8255446..8256223hypothetical protein
LOC_Os04g14740OsAffx.14185.1.S1_x_at1/114+8255446..8256223hypothetical protein
LOC_Os04g14750OsAffx.13821.1.S1_at9/114+8257221..8258587hypothetical protein
LOC_Os04g14760Os.37477.1.S1_at9/114+8260125..8265113phosphoglycerate/bisphosphoglycerate mutase family protein, putative, expressed
LOC_Os04g14770OsAffx.20387.1.S1_x_at1/114+8266506..8272518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14770OsAffx.21161.1.S1_at1/114+8266506..8272518retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004497molecular_functionmonooxygenase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9287.1.S1_at--86--1551Chr01:28537409..28537433 (25 bp)
AGCATTAATCTCTAGCCAACTTGAA
NONE
OsAffx.9287.1.S1_at--400--7951Chr01:28537372..28537396 (25 bp)
GGATACATGCATGGTACTTCCTCCA
NONE
OsAffx.9287.1.S1_at--1000--3471Chr01:28537301..28537369 (25 bp)
CAGGACGTCCATTTCATGAACGCAA
NONE
OsAffx.9287.1.S1_at--1080--8971Chr01:28537285..28537309 (25 bp)
TGAACGCAACGGAACGCCATATTTG
NONE
OsAffx.9287.1.S1_at--607--231Chr01:28537267..28537291 (25 bp)
ATATTTGCCATTCCATCAACCTCAA
NONE
OsAffx.9287.1.S1_at--273--3471Chr01:28537230..28537254 (25 bp)
CAGGAGTGAAAAGAGCCCCAGGAGC
NONE
OsAffx.9287.1.S1_at--547--951Chr01:28537211..28537235 (25 bp)
AGGAGCTCAAAACCGTTCAGTGCCC
NONE
OsAffx.9287.1.S1_at--266--10532Chr08:17073838..17074273 (25 bp)
TTCAGTGCCCACTTTGATTATATTA
NONE
OsAffx.9287.1.S1_at--664--6771Chr01:28537161..28537185 (25 bp)
GTTAGGTCCCGATCATCCAATAGGT
NONE
OsAffx.9287.1.S1_at--415--10231Chr01:28537121..28537145 (25 bp)
TTTGGCGGAAACTTGACTCACACTC
NONE
OsAffx.9287.1.S1_at--939--65517Chr12:12954634..12954654 (21 bp)
GTTATCAACCGTGCCAAAACCGTTG
NONE
Target Sequence 
AGCATTAATCTCTAGCCAACTTGAAGTTGGCAGACCAGGATACATGCATGGTACTTCCTCCACTCAGGACGTCCATTTCA
TGAACGCAACGGAACGCCATATTTGCCATTCCATCAACCTCAACATCTATGAGTTCAGGAGTGAAAAGAGCCCCAGGAGC
TCAAAACCGTTCAGTGCCCACTTTGATTATATTATGATGAGGATGTTAGGTCCCGATCATCCAATAGGTATTGATAACTA
TCAATTTGGCGGAAACTTGACTCACACTCTTGAGCCCCGCAATCGTAGCACCACGTCTCCTCTGGTTATCAACCGTGCCA
AAACCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis