Browse Element(s) Details


OsAffx.13821.1.S1_at

Description tigr:9632.m01353
TID=OsAffx.13821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g147509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14700NANA4+8232202..8235347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14710Os.50352.1.S1_at2/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14710OsAffx.9287.1.S1_at1/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14719NANA4+8250391..8251356NA
LOC_Os04g14730NANA4+8254569..8255024expressed protein
LOC_Os04g14740OsAffx.13820.2.S1_at8/114+8255446..8256223hypothetical protein
LOC_Os04g14740OsAffx.14185.1.S1_x_at1/114+8255446..8256223hypothetical protein
LOC_Os04g14750OsAffx.13821.1.S1_at9/114+8257221..8258587hypothetical protein
LOC_Os04g14760Os.37477.1.S1_at9/114+8260125..8265113phosphoglycerate/bisphosphoglycerate mutase family protein, putative, expressed
LOC_Os04g14770OsAffx.20387.1.S1_x_at1/114+8266506..8272518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14770OsAffx.21161.1.S1_at1/114+8266506..8272518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14780Os.25754.2.S1_x_at3/114+8273528..8275735hypothetical protein
LOC_Os04g14780Os.53479.1.S1_x_at1/114+8273528..8275735hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13821.1.S1_at--669--4611Chr04:8258451..8258509 (25 bp)
GCTGCCCCACGGTGCGGTGGTCCAA
LOC_Os04g14750
OsAffx.13821.1.S1_at--1158--9131Chr04:8258439..8258463 (25 bp)
TGCGGTGGTCCAATCGGCGAGATAT
LOC_Os04g14750
OsAffx.13821.1.S1_at--875--9451Chr04:8258426..8258450 (25 bp)
TCGGCGAGATATCAGCGGTCAGACC
LOC_Os04g14750
OsAffx.13821.1.S1_at--480--851Chr04:8258400..8258424 (25 bp)
ATGGCATCGACCCGGTTAGATCGGC
LOC_Os04g14750
OsAffx.13821.1.S1_at--87--10051Chr04:8258384..8258408 (25 bp)
TAGATCGGCGGCTCCATGGCGGTCA
LOC_Os04g14750
OsAffx.13821.1.S1_at--65--7751Chr04:8258355..8258379 (25 bp)
GGTGGTGGCGACAAGCAACAACAGT
LOC_Os04g14750
OsAffx.13821.1.S1_at--386--2491Chr04:8258336..8258360 (25 bp)
AACAGTACATCAGGCGGTTAGACCG
LOC_Os04g14750
OsAffx.13821.1.S1_at--150--5811Chr04:8258316..8258340 (25 bp)
GACCGGAACAACTACACCGGTCAGA
LOC_Os04g14750
OsAffx.13821.1.S1_at--907--7091NONE
GTCAGACCGACAGATCTACTCCGAT
NONE
OsAffx.13821.1.S1_at--110--5691NONE
GATCTACTCCGATAAAATTCCCGCA
NONE
OsAffx.13821.1.S1_at--536--8791Chr04:8257251..8257275 (25 bp)
TGTTCATGAAGTTGTGTTGAGCTCA
LOC_Os04g14750
Target Sequence 
GCTGCCCCACGGTGCGGTGGTCCAATCGGCGAGATATCAGCGGTCAGACCGATGGCATCGACCCGGTTAGATCGGCGGCT
CCATGGCGGTCAGACCGGTGGTGGCGACAAGCAACAACAGTACATCAGGCGGTTAGACCGGAACAACTACACCGGTCAGA
CCGACAGATCTACTCCGATAAAATTCCCGCAAGAAAGAAAATATCTCAAAGATAGCTTTGTTCATGAAGTTGTGTTGAGC
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis