Browse Element(s) Details


Os.52443.1.S1_at

Description gb:AK067177.1
DB_XREF= gi:32977195
TID=Os.52443.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097L24, full insert sequence.
FL= gb:AK067177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1465411/11Vacuolar protein-sorting protein 33 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14600NANA4+8171066..8173392hypothetical protein
LOC_Os04g14610Os.23638.1.A1_x_at1/114+8175251..8177699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14620NANA4+8177988..8182378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14630NANA4+8185075..8185356hypothetical protein
LOC_Os04g14640OsAffx.13819.1.S1_at10/114+8185978..8187567hypothetical protein
LOC_Os04g14640Os.17546.2.S1_x_at1/114+8185978..8187567hypothetical protein
LOC_Os04g14654Os.52443.1.S1_at11/114+8196368..8213126Vacuolar protein-sorting protein 33 homolog, putative, expressed
LOC_Os04g14670Os.46012.2.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.46012.3.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.27088.1.A1_x_at2/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.54691.1.S1_x_at1/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14680Os.4987.1.S1_at11/114+8219095..8221710L-ascorbate peroxidase 3, putative, expressed
LOC_Os04g14690Os.55278.1.S1_at11/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14690Os.50352.1.S1_at10/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14700NANA4+8232202..8235347retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0009306biological_processprotein secretion
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52443.1.S1_at--837--6651Chr04:8198887..8198911 (25 bp)
GTTGAAACTATTGCCAGGTCCTCAT
LOC_Os04g14654
Os.52443.1.S1_at--905--7851Chr04:8198771..8198795 (25 bp)
GGTAGTTCGGCCATTAATTCTTCAT
LOC_Os04g14654
Os.52443.1.S1_at--848--10751Chr04:8197414..8197792 (25 bp)
TTGACAGGGTTGGACATCGTTCTCT
LOC_Os04g14654
Os.52443.1.S1_at--558--6712Chr09:18913604..18913645 (24 bp)
GTTCTCTGGTTTTGGTTGTCTTTAT
NONE
Os.52443.1.S1_at--783--71Chr04:8197349..8197373 (25 bp)
ATTGCTGCTCTTCGATTCCTTAGTT
LOC_Os04g14654
Os.52443.1.S1_at--1115--10111Chr04:8196701..8196725 (25 bp)
TATGACTTCCTTGTTGCGACCACAA
LOC_Os04g14654
Os.52443.1.S1_at--721--3671Chr04:8196581..8196605 (25 bp)
CTTTTCTGATTGTACTCTCACACAC
LOC_Os04g14654
Os.52443.1.S1_at--105--1591Chr04:8196553..8196577 (25 bp)
AGCTCCACTTGGTTCTCATAGTTGT
LOC_Os04g14654
Os.52443.1.S1_at--831--9591Chr04:8196538..8196562 (25 bp)
TCATAGTTGTTACGGCTCCCTTGTA
LOC_Os04g14654
Os.52443.1.S1_at--704--2431Chr04:8196462..8196486 (25 bp)
AAAATTCCGCATTCTAGTTTGGCAT
LOC_Os04g14654
Os.52443.1.S1_at--333--191Chr04:8196439..8196463 (25 bp)
ATTTCAGTTCTCTATTGCCCGTTTT
LOC_Os04g14654
Target Sequence 
GTTGAAACTATTGCCAGGTCCTCATCTGGATTTGAAAAGAGGTAGTTCGGCCATTAATTCTTCATTGGATGTACACCAAG
GTTTGGGGCTTCAACAGAGTATTGACAGGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTT
GCAGAGATTGCTGCTCTTCGATTCCTTAGTTCTCAGGAAGGGATGGGCTATGACTTCCTTGTTGCGACCACAAAGGTTGT
CAATGGGAACACAATACTCAGGCCAATTATAACCAATAGCAAAGAGGTGATGATATAGAGTAAATAATCTTTTGCTGCAC
ATCCTTTTCTTTTCTGATTGTACTCTCACACACCCGAGCTCCACTTGGTTCTCATAGTTGTTACGGCTCCCTTGTATGTT
CTCAAACTGAGTGTATATATTTTAACATCTGTAGATCTTTCTAGATTAAAATTCCGCATTCTAGTTTGGCATTTCAGTTC
TCTATTGCCCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis