Browse Element(s) Details


Os.49884.1.S1_at

Description gb:AK119284.1
DB_XREF= gi:37988907
TID=Os.49884.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-C09, full insert sequence.
FL= gb:AK119284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2412010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24090NANA11+13194703..13197014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24100Os.26886.3.S1_x_at4/1111+13199778..13201705transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24110OsAffx.18980.1.S1_at11/1111+13204969..13205787hypothetical protein
LOC_Os11g24120Os.49884.1.S1_at10/1111+13207013..13209717expressed protein
LOC_Os11g24130OsAffx.18981.1.S1_at8/1111+13218707..13219852hypothetical protein
LOC_Os11g24140OsAffx.7183.1.S1_s_at10/1111+13222917..13224383Plastocyanin-like domain containing protein, expressed
LOC_Os11g24150OsAffx.20387.1.S1_x_at1/1111+13228721..13234780retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49884.1.S1_at--366--2952Chr11:13207585..13207609 (25 bp)
AATGGCATAGAATCAACCGTTTTGT
LOC_Os11g24120
Os.49884.1.S1_at--253--3211Chr11:13207555..13207579 (25 bp)
CAATGGCAAATTAGCGAGGATGTTC
LOC_Os11g24120
Os.49884.1.S1_at--289--4951Chr11:13207491..13207515 (25 bp)
GCATAAAGTACAAAATCCCTCCCCG
LOC_Os11g24120
Os.49884.1.S1_at--923--4131Chr11:13207470..13207494 (25 bp)
CCCGGCGTGCGTGCGTTGAACGTTA
LOC_Os11g24120
Os.49884.1.S1_at--3--8111Chr11:13207189..13207213 (25 bp)
GGACGCAGAACGGACTTATGCTGTA
LOC_Os11g24120
Os.49884.1.S1_at--805--3951Chr11:13207179..13207203 (25 bp)
CGGACTTATGCTGTAATGAGCTGTT
LOC_Os11g24120
Os.49884.1.S1_at--113--3871Chr11:13207147..13207171 (25 bp)
CTGAGAACAGGAAAGCCCAAGCAAT
LOC_Os11g24120
Os.49884.1.S1_at--383--5551Chr11:13207137..13207161 (25 bp)
GAAAGCCCAAGCAATAGGAGTATTT
LOC_Os11g24120
Os.49884.1.S1_at--516--8211Chr11:13207097..13207121 (25 bp)
GGAATTTGTAACTGGGACTTGAAAT
LOC_Os11g24120
Os.49884.1.S1_at--587--8511Chr11:13207072..13207096 (25 bp)
TGGAATTTGTAGATTGCCTGTAAAC
LOC_Os11g24120
Os.49884.1.S1_at--201--9711Chr11:13207013..13207037 (25 bp)
TAATTGGACAAGTGACTTTGAGCCG
NONE
Target Sequence 
AATGGCATAGAATCAACCGTTTTGTGGGGTCAATGGCAAATTAGCGAGGATGTTCAGGAGGATGGCATTTGGGAATGAGG
CGTTGGGGAAGATGGCATAAAGTACAAAATCCCTCCCCGGCGTGCGTGCGTTGAACGTTAGTTCGGGGCGGCGCACGACA
CTGCTCGTGCTGCCGCGTGGTGCGGCGCGACACGGTGTGCGGTGCGACTCAGCGCGGGAGCGCAATGCGGCGCACGCAAG
GAGGAGGAGCGGTGCGGCACGTCGCGGTGGCTCGGTGACCTGGTGCGCCAGCCTTGCTCGGCTCGGCATTTTGCCGACCA
CGTGGCGGGCGGCGTGTCGGCCTGGCCGACTGAGGCAAGGAAGGAGGGGAAGAAGACTCGGCTACAATGGGGCAGGGGAC
GCAGAACGGACTTATGCTGTAATGAGCTGTTGGGTTGGCTGAGAACAGGAAAGCCCAAGCAATAGGAGTATTTGAATGAC
TATAACAAGGAATTTGTAACTGGGACTTGAAATTGGAATTTGTAGATTGCCTGTAAACATGTAATGGATTGTATGGTTGT
AAATGGACTGTATAATTGGACAAGTGACTTTGAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis