Browse Element(s) Details


Os.49909.1.S1_at

Description gb:AK109818.1
DB_XREF= gi:32995027
TID=Os.49909.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A03, full insert sequence.
FL= gb:AK119333.1 gb:AK109818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1018011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10160NANA11+5494364..5507534expressed protein
LOC_Os11g10170OsAffx.30914.1.S1_x_at11/1111+5510051..5511767Flavin-binding monooxygenase-like family protein
LOC_Os11g10180Os.49909.1.S1_at11/1111+5514048..5517395F-box domain containing protein, expressed
LOC_Os11g10190NANA11+5517294..5520307transposon protein, putative, Mariner sub-class
LOC_Os11g10200Os.54051.1.S1_at10/1111+5525545..5529655F-box domain containing protein, expressed
LOC_Os11g10210NANA11+5536014..5536490hypothetical protein
LOC_Os11g10220NANA11+5542304..5543858retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49909.1.S1_at--512--9471Chr11:5514858..5514882 (25 bp)
TCTGTCATGACCGATGCGCAAATGG
LOC_Os11g10180
Os.49909.1.S1_at--153--10171Chr11:5514932..5514956 (25 bp)
TATAGGCCTGATGAATACGACTGCG
LOC_Os11g10180
Os.49909.1.S1_at--43--1971Chr11:5514951..5514975 (25 bp)
ACTGCGTGTTTCTCGAAGGCTTGAC
LOC_Os11g10180
Os.49909.1.S1_at--808--9911Chr11:5514982..5515006 (25 bp)
TACGGACTTGACTTTGTTAGCTTAT
LOC_Os11g10180
Os.49909.1.S1_at--365--3471Chr11:5515434..5515458 (25 bp)
CAGGGATTTAAAGTGGTGCTCTACA
LOC_Os11g10180
Os.49909.1.S1_at--637--5271Chr11:5515485..5515509 (25 bp)
GAATGCATGGTTTGTGGCTCCTGAC
LOC_Os11g10180
Os.49909.1.S1_at--134--10871Chr11:5515688..5515712 (25 bp)
TTGGAACAACCATTTGCAGCTAGCC
LOC_Os11g10180
Os.49909.1.S1_at--717--5311Chr11:5515771..5515795 (25 bp)
GAAGGTCTTGAATGCCAATGGTGTA
LOC_Os11g10180
Os.49909.1.S1_at--783--6071Chr11:5515832..5515856 (25 bp)
GAGTTATCTATGAACACCCACGCTT
LOC_Os11g10180
Os.49909.1.S1_at--625--3351Chr11:5515850..5515874 (25 bp)
CACGCTTCCTATTATGCAGTTGTCA
LOC_Os11g10180
Os.49909.1.S1_at--712--6951Chr11:5515884..5515908 (25 bp)
GTAGAGCCAAGCACTGTCCATAGTT
LOC_Os11g10180
Target Sequence 
TCTGTCATGACCGATGCGCAAATGGTTGGTACGATGATTGCGGGGATGCTGGTTGTAAGGGTTGTCATGATTATTATAGG
CCTGATGAATACGACTGCGTGTTTCTCGAAGGCTTGACGGAAGCTACGGACTTGACTTTGTTAGCTTATTCTAAAGTGTA
CCTTTTCAACAGGGATTTAAAGTGGTGCTCTACATTTAGCAAGTTAAAGACTTTGTTTCTGAATGCATGGTTTGTGGCTC
CTGACCTCAGTGCACTAGCTTGGTTTCTCCAACACGCACCTCTTCTTGAAAGGCTTTTTCTTAGAGTTTCAAAGGTACCC
AAAAATTTAGTGGGAATGGATGGAAGTTTCAATCAATTGGAACAACCATTTGCAGCTAGCCATCTTCAAATAGTTGAAAT
CTATTGCAGAGAGGTTGATGGGATTATTCTCAAAATTTTGAAGGTCTTGAATGCCAATGGTGTACCACTAGAGAAAATTA
GTATCCGATGTNCTGGCTGTGAGTTATCTATGAACACCCACGCTTCCTATTATGCAGTTGTCAATATGTGTTGTAGAGCC
AAGCACTGTCCATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis