Browse Element(s) Details


Os.4995.1.S1_at

Description gb:AK120228.1
DB_XREF= gi:37989851
TID=Os.4995.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042P21, full insert sequence.
FL= gb:AK120228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g557847/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein
LOC_Os03g55784Os.4995.1.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55784Os.8266.2.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4995.1.S1_at--105--9911Chr03:31697012..31697036 (25 bp)
TACTCAACTGAGCTTTTCTTTGGAG
NONE
Os.4995.1.S1_at--1136--7451Chr03:31697040..31697064 (25 bp)
GTGTGCGAAGCTAGTGAATTCACTC
NONE
Os.4995.1.S1_at--224--5211Chr03:31697055..31697079 (25 bp)
GAATTCACTCAGCTAGCTCGGAGAG
NONE
Os.4995.1.S1_at--635--411Chr03:31697098..31697122 (25 bp)
ATCATTAATCAATGGCGGGCCTGGT
NONE
Os.4995.1.S1_at--68--891Chr03:31697302..31697326 (25 bp)
AGGCCACCGTGTGCATGCTCATGGA
LOC_Os03g55784
Os.4995.1.S1_at--345--7431Chr03:31697364..31697388 (25 bp)
GGGCTTTCGCCGGTAAAATGGATTG
LOC_Os03g55784
Os.4995.1.S1_at--640--6231Chr03:31697388..31697412 (25 bp)
GATGGAAGCGTGTACCGTGTATATA
LOC_Os03g55784
Os.4995.1.S1_at--1018--9891Chr03:31697420..31697444 (25 bp)
TACTCTCTGTATATAACCACTTTGC
LOC_Os03g55784
Os.4995.1.S1_at--421--2651Chr03:31697434..31697458 (25 bp)
AACCACTTTGCCTTGCTATTTTGCA
LOC_Os03g55784
Os.4995.1.S1_at--1024--6891Chr03:31697465..31697489 (25 bp)
GTATCATATGGGTTGTAATCCTTCA
LOC_Os03g55784
Os.4995.1.S1_at--750--3111Chr03:31697490..31697514 (25 bp)
AATTTGGAGTCGATTCATTGGTTAA
LOC_Os03g55784
Target Sequence 
TACTCAACTGAGCTTTTCTTTGGAGTGTGTGTGCGAAGCTAGTGAATTCACTCAGCTAGCTCGGAGAGGCAGAGAGGAAC
AGACTAATCATTAATCAATGGCGGGCCTGGTTGGAGTTTGGCTGGGGGAGTTCGCCAAGATGGGCCGGGGGGCGGCACCG
GCGGCCGACGCCGNGGTCGGCCAGCGANCTCAGAGCGAAGGGGAGAGCTGCAAGAGTAAGGTTGGTGATGGTGTTGTGCA
GGAGATCACGACGAGGACGAGGGACAGCAGCATCCTCCTCTCCGACTCCGAGGCCACCGTGTGCATGCTCATGGACCGCT
TCGCCCCTGCCTGACGCCGCTCACTGGCCGCTGGGCTTTCGCCGGTAAAATGGATTGATGGAAGCGTGTACCGTGTATAT
AGTAGATANNTACTCTCTGTATATAACCACTTTGCCTTGCTATTTTGCATCAATTGTATCATATGGGTTGTAATCCTTCA
AATTTGGAGTCGATTCATTGGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis